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CRYGN (crystallin gamma N)

Identity

Alias_namescrystallin, gamma N
Other alias-
HGNC (Hugo) CRYGN
LocusID (NCBI) 155051
Atlas_Id 62113
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151428832 and ends at 151440170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYGN   20458
Cards
Entrez_Gene (NCBI)CRYGN  155051  crystallin gamma N
Aliases
GeneCards (Weizmann)CRYGN
Ensembl hg19 (Hinxton)ENSG00000127377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127377 [Gene_View]  chr7:151428832-151440170 [Contig_View]  CRYGN [Vega]
ICGC DataPortalENSG00000127377
TCGA cBioPortalCRYGN
AceView (NCBI)CRYGN
Genatlas (Paris)CRYGN
WikiGenes155051
SOURCE (Princeton)CRYGN
Genetics Home Reference (NIH)CRYGN
Genomic and cartography
GoldenPath hg38 (UCSC)CRYGN  -     chr7:151428832-151440170 -  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYGN  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblCRYGN - 7q36.1 [CytoView hg19]  CRYGN - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBICRYGN [Mapview hg19]  CRYGN [Mapview hg38]
OMIM609603   
Gene and transcription
Genbank (Entrez)AF445455 BC043605 BC100878 BC100879 BC100880
RefSeq transcript (Entrez)NM_001308292 NM_144727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYGN
Cluster EST : UnigeneHs.647104 [ NCBI ]
CGAP (NCI)Hs.647104
Alternative Splicing GalleryENSG00000127377
Gene ExpressionCRYGN [ NCBI-GEO ]   CRYGN [ EBI - ARRAY_EXPRESS ]   CRYGN [ SEEK ]   CRYGN [ MEM ]
Gene Expression Viewer (FireBrowse)CRYGN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155051
GTEX Portal (Tissue expression)CRYGN
Human Protein AtlasENSG00000127377-CRYGN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXF5
Splice isoforms : SwissVarQ8WXF5
PhosPhoSitePlusQ8WXF5
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYGN
DMDM Disease mutations155051
Blocks (Seattle)CRYGN
SuperfamilyQ8WXF5
Human Protein Atlas [tissue]ENSG00000127377-CRYGN [tissue]
Peptide AtlasQ8WXF5
HPRD16761
IPIIPI00103529   IPI00643547   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXF5
IntAct (EBI)Q8WXF5
FunCoupENSG00000127377
BioGRIDCRYGN
STRING (EMBL)CRYGN
ZODIACCRYGN
Ontologies - Pathways
QuickGOQ8WXF5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCRYGN
Atlas of Cancer Signalling NetworkCRYGN
Wikipedia pathwaysCRYGN
Orthology - Evolution
OrthoDB155051
GeneTree (enSembl)ENSG00000127377
Phylogenetic Trees/Animal Genes : TreeFamCRYGN
HOVERGENQ8WXF5
HOGENOMQ8WXF5
Homologs : HomoloGeneCRYGN
Homology/Alignments : Family Browser (UCSC)CRYGN
Gene fusions - Rearrangements
Tumor Fusion PortalCRYGN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYGN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYGN
dbVarCRYGN
ClinVarCRYGN
1000_GenomesCRYGN 
Exome Variant ServerCRYGN
ExAC (Exome Aggregation Consortium)ENSG00000127377
GNOMAD BrowserENSG00000127377
Genetic variants : HAPMAP155051
Genomic Variants (DGV)CRYGN [DGVbeta]
DECIPHERCRYGN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYGN 
Mutations
ICGC Data PortalCRYGN 
TCGA Data PortalCRYGN 
Broad Tumor PortalCRYGN
OASIS PortalCRYGN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYGN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYGN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRYGN
DgiDB (Drug Gene Interaction Database)CRYGN
DoCM (Curated mutations)CRYGN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYGN (select a term)
intoGenCRYGN
Cancer3DCRYGN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609603   
Orphanet
DisGeNETCRYGN
MedgenCRYGN
Genetic Testing Registry CRYGN
NextProtQ8WXF5 [Medical]
TSGene155051
GENETestsCRYGN
Target ValidationCRYGN
Huge Navigator CRYGN [HugePedia]
snp3D : Map Gene to Disease155051
BioCentury BCIQCRYGN
ClinGenCRYGN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155051
Chemical/Pharm GKB GenePA134870586
Clinical trialCRYGN
Miscellaneous
canSAR (ICR)CRYGN (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYGN
EVEXCRYGN
GoPubMedCRYGN
iHOPCRYGN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:15:54 CET 2017

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