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CRYGS (crystallin gamma S)

Identity

Alias_namesCRYG8
crystallin, gamma S
Other aliasCTRCT20
HGNC (Hugo) CRYGS
LocusID (NCBI) 1427
Atlas_Id 62114
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 186538439 and ends at 186544451 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DGKG (3q27.2) / CRYGS (3q27.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYGS   2417
Cards
Entrez_Gene (NCBI)CRYGS  1427  crystallin gamma S
AliasesCRYG8; CTRCT20
GeneCards (Weizmann)CRYGS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:186538439-186544451 [Contig_View]  CRYGS [Vega]
TCGA cBioPortalCRYGS
AceView (NCBI)CRYGS
Genatlas (Paris)CRYGS
WikiGenes1427
SOURCE (Princeton)CRYGS
Genetics Home Reference (NIH)CRYGS
Genomic and cartography
GoldenPath hg38 (UCSC)CRYGS  -     chr3:186538439-186544451 -  3q27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYGS  -     3q27.3   [Description]    (hg19-Feb_2009)
EnsemblCRYGS - 3q27.3 [CytoView hg19]  CRYGS - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBICRYGS [Mapview hg19]  CRYGS [Mapview hg38]
OMIM116100   123730   
Gene and transcription
Genbank (Entrez)AF161703 AK314172 AL133079 BC069478 BC070241
RefSeq transcript (Entrez)NM_017541
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYGS
Cluster EST : UnigeneHs.376209 [ NCBI ]
CGAP (NCI)Hs.376209
Gene ExpressionCRYGS [ NCBI-GEO ]   CRYGS [ EBI - ARRAY_EXPRESS ]   CRYGS [ SEEK ]   CRYGS [ MEM ]
Gene Expression Viewer (FireBrowse)CRYGS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1427
GTEX Portal (Tissue expression)CRYGS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP22914   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP22914  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP22914
Splice isoforms : SwissVarP22914
PhosPhoSitePlusP22914
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYGS
DMDM Disease mutations1427
Blocks (Seattle)CRYGS
PDB (SRS)1HA4    2M3T    2M3U   
PDB (PDBSum)1HA4    2M3T    2M3U   
PDB (IMB)1HA4    2M3T    2M3U   
PDB (RSDB)1HA4    2M3T    2M3U   
Structural Biology KnowledgeBase1HA4    2M3T    2M3U   
SCOP (Structural Classification of Proteins)1HA4    2M3T    2M3U   
CATH (Classification of proteins structures)1HA4    2M3T    2M3U   
SuperfamilyP22914
Peptide AtlasP22914
HPRD00439
IPIIPI00554640   
Protein Interaction databases
DIP (DOE-UCLA)P22914
IntAct (EBI)P22914
BioGRIDCRYGS
STRING (EMBL)CRYGS
ZODIACCRYGS
Ontologies - Pathways
QuickGOP22914
Ontology : AmiGOmorphogenesis of an epithelium  lens development in camera-type eye  structural constituent of eye lens  
Ontology : EGO-EBImorphogenesis of an epithelium  lens development in camera-type eye  structural constituent of eye lens  
NDEx NetworkCRYGS
Atlas of Cancer Signalling NetworkCRYGS
Wikipedia pathwaysCRYGS
Orthology - Evolution
OrthoDB1427
Phylogenetic Trees/Animal Genes : TreeFamCRYGS
HOVERGENP22914
HOGENOMP22914
Homologs : HomoloGeneCRYGS
Homology/Alignments : Family Browser (UCSC)CRYGS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYGS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYGS
dbVarCRYGS
ClinVarCRYGS
1000_GenomesCRYGS 
Exome Variant ServerCRYGS
ExAC (Exome Aggregation Consortium)CRYGS (select the gene name)
Genetic variants : HAPMAP1427
Genomic Variants (DGV)CRYGS [DGVbeta]
DECIPHERCRYGS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYGS 
Mutations
ICGC Data PortalCRYGS 
TCGA Data PortalCRYGS 
Broad Tumor PortalCRYGS
OASIS PortalCRYGS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYGS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYGS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CRYGS
DgiDB (Drug Gene Interaction Database)CRYGS
DoCM (Curated mutations)CRYGS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYGS (select a term)
intoGenCRYGS
Cancer3DCRYGS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM116100    123730   
Orphanet23423    14002   
MedgenCRYGS
Genetic Testing Registry CRYGS
NextProtP22914 [Medical]
TSGene1427
GENETestsCRYGS
Target ValidationCRYGS
Huge Navigator CRYGS [HugePedia]
snp3D : Map Gene to Disease1427
BioCentury BCIQCRYGS
ClinGenCRYGS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1427
Chemical/Pharm GKB GenePA26922
Clinical trialCRYGS
Miscellaneous
canSAR (ICR)CRYGS (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYGS
EVEXCRYGS
GoPubMedCRYGS
iHOPCRYGS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:38 CEST 2017

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