Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CRYM-AS1 (CRYM antisense RNA 1)

Identity

Alias_namesNCRNA00169
non-protein coding RNA 169
CRYM antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)FLJ41766
Other alias
HGNC (Hugo) CRYM-AS1
LocusID (NCBI) 400508
Atlas_Id 62115
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21312170 and ends at 21329269 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYM-AS1   34405
Cards
Entrez_Gene (NCBI)CRYM-AS1  400508  CRYM antisense RNA 1
AliasesNCRNA00169
GeneCards (Weizmann)CRYM-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr16:21312170-21329269 [Contig_View]  CRYM-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21312170-21329269 [Contig_View]  CRYM-AS1 [Vega]
TCGA cBioPortalCRYM-AS1
AceView (NCBI)CRYM-AS1
Genatlas (Paris)CRYM-AS1
WikiGenes400508
SOURCE (Princeton)CRYM-AS1
Genetics Home Reference (NIH)CRYM-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)CRYM-AS1  -     chr16:21312170-21329269 +  16p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRYM-AS1  -     16p12.2   [Description]    (hg38-Dec_2013)
EnsemblCRYM-AS1 - 16p12.2 [CytoView hg19]  CRYM-AS1 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBICRYM-AS1 [Mapview hg19]  CRYM-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123760 BC056679 DB278209 HG507829 HG507830
RefSeq transcript (Entrez)NM_001101368
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)CRYM-AS1
Cluster EST : UnigeneHs.578949 [ NCBI ]
CGAP (NCI)Hs.578949
Gene ExpressionCRYM-AS1 [ NCBI-GEO ]   CRYM-AS1 [ EBI - ARRAY_EXPRESS ]   CRYM-AS1 [ SEEK ]   CRYM-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRYM-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400508
GTEX Portal (Tissue expression)CRYM-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIL9
Splice isoforms : SwissVarA6NIL9
PhosPhoSitePlusA6NIL9
Domains : Interpro (EBI)ABC_A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CRYM-AS1
DMDM Disease mutations400508
Blocks (Seattle)CRYM-AS1
SuperfamilyA6NIL9
Peptide AtlasA6NIL9
IPIIPI00185763   
Protein Interaction databases
DIP (DOE-UCLA)A6NIL9
IntAct (EBI)A6NIL9
BioGRIDCRYM-AS1
STRING (EMBL)CRYM-AS1
ZODIACCRYM-AS1
Ontologies - Pathways
QuickGOA6NIL9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCRYM-AS1
Atlas of Cancer Signalling NetworkCRYM-AS1
Wikipedia pathwaysCRYM-AS1
Orthology - Evolution
OrthoDB400508
Phylogenetic Trees/Animal Genes : TreeFamCRYM-AS1
HOVERGENA6NIL9
HOGENOMA6NIL9
Homologs : HomoloGeneCRYM-AS1
Homology/Alignments : Family Browser (UCSC)CRYM-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYM-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYM-AS1
dbVarCRYM-AS1
ClinVarCRYM-AS1
1000_GenomesCRYM-AS1 
Exome Variant ServerCRYM-AS1
ExAC (Exome Aggregation Consortium)CRYM-AS1 (select the gene name)
Genetic variants : HAPMAP400508
Genomic Variants (DGV)CRYM-AS1 [DGVbeta]
DECIPHER (Syndromes)16:21312170-21329269  
CONAN: Copy Number AnalysisCRYM-AS1 
Mutations
ICGC Data PortalCRYM-AS1 
TCGA Data PortalCRYM-AS1 
Broad Tumor PortalCRYM-AS1
OASIS PortalCRYM-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCRYM-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRYM-AS1
DgiDB (Drug Gene Interaction Database)CRYM-AS1
DoCM (Curated mutations)CRYM-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYM-AS1 (select a term)
intoGenCRYM-AS1
Cancer3DCRYM-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCRYM-AS1
Genetic Testing Registry CRYM-AS1
NextProtA6NIL9 [Medical]
TSGene400508
GENETestsCRYM-AS1
Huge Navigator CRYM-AS1 [HugePedia]
snp3D : Map Gene to Disease400508
BioCentury BCIQCRYM-AS1
ClinGenCRYM-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400508
Chemical/Pharm GKB GenePA164723759
Clinical trialCRYM-AS1
Miscellaneous
canSAR (ICR)CRYM-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYM-AS1
EVEXCRYM-AS1
GoPubMedCRYM-AS1
iHOPCRYM-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:25 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.