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CSAD (cysteine sulfinic acid decarboxylase)

Identity

Alias_symbol (synonym)PCAP
CSD
Other alias
HGNC (Hugo) CSAD
LocusID (NCBI) 51380
Atlas_Id 40157
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53157663 and ends at 53180909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSAD (12q13.13) / CSAD (12q13.13)CSAD (12q13.13) / ITGB7 (12q13.13)CSAD (12q13.13) / MEG3 (14q32.2)
CSAD (12q13.13) / UQCRQ (5q31.1)CXCL14 (5q31.1) / CSAD (12q13.13)KRT8 (12q13.13) / CSAD (12q13.13)
NFE2L2 (2q31.2) / CSAD (12q13.13)CSAD 12q13.13 / ITGB7 12q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSAD   18966
Cards
Entrez_Gene (NCBI)CSAD  51380  cysteine sulfinic acid decarboxylase
AliasesCSD; PCAP
GeneCards (Weizmann)CSAD
Ensembl hg19 (Hinxton)ENSG00000139631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139631 [Gene_View]  chr12:53157663-53180909 [Contig_View]  CSAD [Vega]
ICGC DataPortalENSG00000139631
TCGA cBioPortalCSAD
AceView (NCBI)CSAD
Genatlas (Paris)CSAD
WikiGenes51380
SOURCE (Princeton)CSAD
Genetics Home Reference (NIH)CSAD
Genomic and cartography
GoldenPath hg38 (UCSC)CSAD  -     chr12:53157663-53180909 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSAD  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblCSAD - 12q13.13 [CytoView hg19]  CSAD - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBICSAD [Mapview hg19]  CSAD [Mapview hg38]
OMIM616569   
Gene and transcription
Genbank (Entrez)AB044561 AF116545 AF116546 AF116547 AF116548
RefSeq transcript (Entrez)NM_001244705 NM_001244706 NM_015989
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSAD
Cluster EST : UnigeneHs.279815 [ NCBI ]
CGAP (NCI)Hs.279815
Alternative Splicing GalleryENSG00000139631
Gene ExpressionCSAD [ NCBI-GEO ]   CSAD [ EBI - ARRAY_EXPRESS ]   CSAD [ SEEK ]   CSAD [ MEM ]
Gene Expression Viewer (FireBrowse)CSAD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51380
GTEX Portal (Tissue expression)CSAD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y600   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y600  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y600
Splice isoforms : SwissVarQ9Y600
Catalytic activity : Enzyme4.1.1.29 [ Enzyme-Expasy ]   4.1.1.294.1.1.29 [ IntEnz-EBI ]   4.1.1.29 [ BRENDA ]   4.1.1.29 [ KEGG ]   
PhosPhoSitePlusQ9Y600
Domains : Interpro (EBI)PyrdxlP-dep_de-COase    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2   
Domain families : Pfam (Sanger)Pyridoxal_deC (PF00282)   
Domain families : Pfam (NCBI)pfam00282   
Conserved Domain (NCBI)CSAD
DMDM Disease mutations51380
Blocks (Seattle)CSAD
PDB (SRS)2JIS   
PDB (PDBSum)2JIS   
PDB (IMB)2JIS   
PDB (RSDB)2JIS   
Structural Biology KnowledgeBase2JIS   
SCOP (Structural Classification of Proteins)2JIS   
CATH (Classification of proteins structures)2JIS   
SuperfamilyQ9Y600
Human Protein AtlasENSG00000139631
Peptide AtlasQ9Y600
HPRD16763
IPIIPI00465165   IPI00220948   IPI00925494   IPI00789682   IPI00791483   IPI01010303   IPI01015951   IPI01022255   IPI00018011   IPI00924984   IPI00926431   IPI00926209   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y600
IntAct (EBI)Q9Y600
FunCoupENSG00000139631
BioGRIDCSAD
STRING (EMBL)CSAD
ZODIACCSAD
Ontologies - Pathways
QuickGOQ9Y600
Ontology : AmiGOsulfinoalanine decarboxylase activity  carboxylic acid metabolic process  pyridoxal phosphate binding  taurine biosynthetic process  
Ontology : EGO-EBIsulfinoalanine decarboxylase activity  carboxylic acid metabolic process  pyridoxal phosphate binding  taurine biosynthetic process  
Pathways : KEGGTaurine and hypotaurine metabolism   
NDEx NetworkCSAD
Atlas of Cancer Signalling NetworkCSAD
Wikipedia pathwaysCSAD
Orthology - Evolution
OrthoDB51380
GeneTree (enSembl)ENSG00000139631
Phylogenetic Trees/Animal Genes : TreeFamCSAD
HOVERGENQ9Y600
HOGENOMQ9Y600
Homologs : HomoloGeneCSAD
Homology/Alignments : Family Browser (UCSC)CSAD
Gene fusions - Rearrangements
Fusion : MitelmanCSAD/ITGB7 [12q13.13/12q13.13]  
Fusion: TCGACSAD 12q13.13 ITGB7 12q13.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSAD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSAD
dbVarCSAD
ClinVarCSAD
1000_GenomesCSAD 
Exome Variant ServerCSAD
ExAC (Exome Aggregation Consortium)CSAD (select the gene name)
Genetic variants : HAPMAP51380
Genomic Variants (DGV)CSAD [DGVbeta]
DECIPHERCSAD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSAD 
Mutations
ICGC Data PortalCSAD 
TCGA Data PortalCSAD 
Broad Tumor PortalCSAD
OASIS PortalCSAD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSAD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSAD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSAD
DgiDB (Drug Gene Interaction Database)CSAD
DoCM (Curated mutations)CSAD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSAD (select a term)
intoGenCSAD
Cancer3DCSAD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616569   
Orphanet
MedgenCSAD
Genetic Testing Registry CSAD
NextProtQ9Y600 [Medical]
TSGene51380
GENETestsCSAD
Huge Navigator CSAD [HugePedia]
snp3D : Map Gene to Disease51380
BioCentury BCIQCSAD
ClinGenCSAD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51380
Chemical/Pharm GKB GenePA38771
Clinical trialCSAD
Miscellaneous
canSAR (ICR)CSAD (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSAD
EVEXCSAD
GoPubMedCSAD
iHOPCSAD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:54 CEST 2017

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