Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CSAG1 (chondrosarcoma associated gene 1)

Identity

Alias_namesmember 1
Alias_symbol (synonym)CSAGE
CT24.1
Other alias
HGNC (Hugo) CSAG1
LocusID (NCBI) 158511
Atlas_Id 40158
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 151903227 and ends at 151909518 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSAG1   24294
Cards
Entrez_Gene (NCBI)CSAG1  158511  chondrosarcoma associated gene 1
AliasesCSAGE; CT24.1
GeneCards (Weizmann)CSAG1
Ensembl hg19 (Hinxton)ENSG00000198930 [Gene_View]  chrX:151903227-151909518 [Contig_View]  CSAG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198930 [Gene_View]  chrX:151903227-151909518 [Contig_View]  CSAG1 [Vega]
ICGC DataPortalENSG00000198930
TCGA cBioPortalCSAG1
AceView (NCBI)CSAG1
Genatlas (Paris)CSAG1
WikiGenes158511
SOURCE (Princeton)CSAG1
Genetics Home Reference (NIH)CSAG1
Genomic and cartography
GoldenPath hg19 (UCSC)CSAG1  -     chrX:151903227-151909518 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSAG1  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblCSAG1 - Xq28 [CytoView hg19]  CSAG1 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICSAG1 [Mapview hg19]  CSAG1 [Mapview hg38]
OMIM300944   
Gene and transcription
Genbank (Entrez)AF195880 AF268418 AF268419 BC059947 BF570999
RefSeq transcript (Entrez)NM_001102576 NM_153478 NM_153479
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013228 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)CSAG1
Cluster EST : UnigeneHs.423718 [ NCBI ]
CGAP (NCI)Hs.423718
Alternative Splicing GalleryENSG00000198930
Gene ExpressionCSAG1 [ NCBI-GEO ]   CSAG1 [ EBI - ARRAY_EXPRESS ]   CSAG1 [ SEEK ]   CSAG1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSAG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158511
GTEX Portal (Tissue expression)CSAG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PB30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PB30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PB30
Splice isoforms : SwissVarQ6PB30
PhosPhoSitePlusQ6PB30
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSAG1
DMDM Disease mutations158511
Blocks (Seattle)CSAG1
SuperfamilyQ6PB30
Human Protein AtlasENSG00000198930
Peptide AtlasQ6PB30
HPRD06475
IPIIPI00419102   IPI00847160   IPI00373993   
Protein Interaction databases
DIP (DOE-UCLA)Q6PB30
IntAct (EBI)Q6PB30
FunCoupENSG00000198930
BioGRIDCSAG1
STRING (EMBL)CSAG1
ZODIACCSAG1
Ontologies - Pathways
QuickGOQ6PB30
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCSAG1
Atlas of Cancer Signalling NetworkCSAG1
Wikipedia pathwaysCSAG1
Orthology - Evolution
OrthoDB158511
GeneTree (enSembl)ENSG00000198930
Phylogenetic Trees/Animal Genes : TreeFamCSAG1
HOVERGENQ6PB30
HOGENOMQ6PB30
Homologs : HomoloGeneCSAG1
Homology/Alignments : Family Browser (UCSC)CSAG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSAG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSAG1
dbVarCSAG1
ClinVarCSAG1
1000_GenomesCSAG1 
Exome Variant ServerCSAG1
ExAC (Exome Aggregation Consortium)CSAG1 (select the gene name)
Genetic variants : HAPMAP158511
Genomic Variants (DGV)CSAG1 [DGVbeta]
DECIPHER (Syndromes)X:151903227-151909518  ENSG00000198930
CONAN: Copy Number AnalysisCSAG1 
Mutations
ICGC Data PortalCSAG1 
TCGA Data PortalCSAG1 
Broad Tumor PortalCSAG1
OASIS PortalCSAG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSAG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSAG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CSAG1
DgiDB (Drug Gene Interaction Database)CSAG1
DoCM (Curated mutations)CSAG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSAG1 (select a term)
intoGenCSAG1
Cancer3DCSAG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300944   
Orphanet
MedgenCSAG1
Genetic Testing Registry CSAG1
NextProtQ6PB30 [Medical]
TSGene158511
GENETestsCSAG1
Huge Navigator CSAG1 [HugePedia]
snp3D : Map Gene to Disease158511
BioCentury BCIQCSAG1
ClinGenCSAG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158511
Chemical/Pharm GKB GenePA134962241
Clinical trialCSAG1
Miscellaneous
canSAR (ICR)CSAG1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSAG1
EVEXCSAG1
GoPubMedCSAG1
iHOPCSAG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:50 CET 2017

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