Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CSAG3 (CSAG family member 3)

Identity

Alias_namesCSAG3A
CSAG family, member 3A
CSAG family, member 3
Other aliasCT24.2
HGNC (Hugo) CSAG3
LocusID (NCBI) 389903
Atlas_Id 62117
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 152708261 and ends at 152709265 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSAG3   26237
Cards
Entrez_Gene (NCBI)CSAG3  389903  CSAG family member 3
AliasesCSAG3A; CT24.2
GeneCards (Weizmann)CSAG3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:152708261-152709265 [Contig_View]  CSAG3 [Vega]
TCGA cBioPortalCSAG3
AceView (NCBI)CSAG3
Genatlas (Paris)CSAG3
WikiGenes389903
SOURCE (Princeton)CSAG3
Genetics Home Reference (NIH)CSAG3
Genomic and cartography
GoldenPath hg38 (UCSC)CSAG3  -     chrX:152708261-152709265 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSAG3  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblCSAG3 - Xq28 [CytoView hg19]  CSAG3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICSAG3 [Mapview hg19]  CSAG3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF080246 AF136715 AF268420 AJ844639 BC007228
RefSeq transcript (Entrez)NM_001129826 NM_001129828 NM_203311
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSAG3
Cluster EST : UnigeneHs.741932 [ NCBI ]
CGAP (NCI)Hs.741932
Gene ExpressionCSAG3 [ NCBI-GEO ]   CSAG3 [ EBI - ARRAY_EXPRESS ]   CSAG3 [ SEEK ]   CSAG3 [ MEM ]
Gene Expression Viewer (FireBrowse)CSAG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389903
GTEX Portal (Tissue expression)CSAG3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5P2
Splice isoforms : SwissVarQ9Y5P2
PhosPhoSitePlusQ9Y5P2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSAG3
DMDM Disease mutations389903
Blocks (Seattle)CSAG3
SuperfamilyQ9Y5P2
Peptide AtlasQ9Y5P2
HPRD14214
IPIIPI00001683   IPI00218445   IPI00941403   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5P2
IntAct (EBI)Q9Y5P2
BioGRIDCSAG3
STRING (EMBL)CSAG3
ZODIACCSAG3
Ontologies - Pathways
QuickGOQ9Y5P2
Ontology : AmiGOresponse to drug  
Ontology : EGO-EBIresponse to drug  
NDEx NetworkCSAG3
Atlas of Cancer Signalling NetworkCSAG3
Wikipedia pathwaysCSAG3
Orthology - Evolution
OrthoDB389903
Phylogenetic Trees/Animal Genes : TreeFamCSAG3
HOVERGENQ9Y5P2
HOGENOMQ9Y5P2
Homologs : HomoloGeneCSAG3
Homology/Alignments : Family Browser (UCSC)CSAG3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSAG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSAG3
dbVarCSAG3
ClinVarCSAG3
1000_GenomesCSAG3 
Exome Variant ServerCSAG3
ExAC (Exome Aggregation Consortium)CSAG3 (select the gene name)
Genetic variants : HAPMAP389903
Genomic Variants (DGV)CSAG3 [DGVbeta]
DECIPHERCSAG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSAG3 
Mutations
ICGC Data PortalCSAG3 
TCGA Data PortalCSAG3 
Broad Tumor PortalCSAG3
OASIS PortalCSAG3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCSAG3
BioMutasearch CSAG3
DgiDB (Drug Gene Interaction Database)CSAG3
DoCM (Curated mutations)CSAG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSAG3 (select a term)
intoGenCSAG3
Cancer3DCSAG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSAG3
Genetic Testing Registry CSAG3
NextProtQ9Y5P2 [Medical]
TSGene389903
GENETestsCSAG3
Target ValidationCSAG3
Huge Navigator CSAG3 [HugePedia]
snp3D : Map Gene to Disease389903
BioCentury BCIQCSAG3
ClinGenCSAG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389903
Chemical/Pharm GKB GenePA162382828
Clinical trialCSAG3
Miscellaneous
canSAR (ICR)CSAG3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSAG3
EVEXCSAG3
GoPubMedCSAG3
iHOPCSAG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.