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CSDC2 (cold shock domain containing C2, RNA binding)

Identity

Alias_namescold shock domain containing C2, RNA binding
Alias_symbol (synonym)PIPPin
Other aliasPIPPIN
dJ347H13.2
HGNC (Hugo) CSDC2
LocusID (NCBI) 27254
Atlas_Id 62118
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41957014 and ends at 41972670 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSDC2   30359
Cards
Entrez_Gene (NCBI)CSDC2  27254  cold shock domain containing C2, RNA binding
AliasesPIPPIN; dJ347H13.2
GeneCards (Weizmann)CSDC2
Ensembl hg19 (Hinxton)ENSG00000172346 [Gene_View]  chr22:41957014-41972670 [Contig_View]  CSDC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172346 [Gene_View]  chr22:41957014-41972670 [Contig_View]  CSDC2 [Vega]
ICGC DataPortalENSG00000172346
TCGA cBioPortalCSDC2
AceView (NCBI)CSDC2
Genatlas (Paris)CSDC2
WikiGenes27254
SOURCE (Princeton)CSDC2
Genetics Home Reference (NIH)CSDC2
Genomic and cartography
GoldenPath hg19 (UCSC)CSDC2  -     chr22:41957014-41972670 +  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSDC2  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblCSDC2 - 22q13.2 [CytoView hg19]  CSDC2 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBICSDC2 [Mapview hg19]  CSDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB027011 AK313407 AL834417 BC067113 CR456457
RefSeq transcript (Entrez)NM_014460
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)CSDC2
Cluster EST : UnigeneHs.310893 [ NCBI ]
CGAP (NCI)Hs.310893
Alternative Splicing GalleryENSG00000172346
Gene ExpressionCSDC2 [ NCBI-GEO ]   CSDC2 [ EBI - ARRAY_EXPRESS ]   CSDC2 [ SEEK ]   CSDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CSDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27254
GTEX Portal (Tissue expression)CSDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y534   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y534  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y534
Splice isoforms : SwissVarQ9Y534
PhosPhoSitePlusQ9Y534
Domaine pattern : Prosite (Expaxy)COLD_SHOCK (PS00352)   
Domains : Interpro (EBI)Cold-shock_CS    Cold_shock_prot    CSP_DNA-bd    NA-bd_OB-fold   
Domain families : Pfam (Sanger)CSD (PF00313)   
Domain families : Pfam (NCBI)pfam00313   
Domain families : Smart (EMBL)CSP (SM00357)  
Conserved Domain (NCBI)CSDC2
DMDM Disease mutations27254
Blocks (Seattle)CSDC2
SuperfamilyQ9Y534
Human Protein AtlasENSG00000172346
Peptide AtlasQ9Y534
HPRD15140
IPIIPI00171508   IPI00884067   IPI00917143   IPI00945746   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y534
IntAct (EBI)Q9Y534
FunCoupENSG00000172346
BioGRIDCSDC2
STRING (EMBL)CSDC2
ZODIACCSDC2
Ontologies - Pathways
QuickGOQ9Y534
Ontology : AmiGODNA binding  RNA binding  protein binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  mRNA processing  
Ontology : EGO-EBIDNA binding  RNA binding  protein binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  mRNA processing  
NDEx NetworkCSDC2
Atlas of Cancer Signalling NetworkCSDC2
Wikipedia pathwaysCSDC2
Orthology - Evolution
OrthoDB27254
GeneTree (enSembl)ENSG00000172346
Phylogenetic Trees/Animal Genes : TreeFamCSDC2
HOVERGENQ9Y534
HOGENOMQ9Y534
Homologs : HomoloGeneCSDC2
Homology/Alignments : Family Browser (UCSC)CSDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSDC2
dbVarCSDC2
ClinVarCSDC2
1000_GenomesCSDC2 
Exome Variant ServerCSDC2
ExAC (Exome Aggregation Consortium)CSDC2 (select the gene name)
Genetic variants : HAPMAP27254
Genomic Variants (DGV)CSDC2 [DGVbeta]
DECIPHER (Syndromes)22:41957014-41972670  ENSG00000172346
CONAN: Copy Number AnalysisCSDC2 
Mutations
ICGC Data PortalCSDC2 
TCGA Data PortalCSDC2 
Broad Tumor PortalCSDC2
OASIS PortalCSDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSDC2
DgiDB (Drug Gene Interaction Database)CSDC2
DoCM (Curated mutations)CSDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSDC2 (select a term)
intoGenCSDC2
Cancer3DCSDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSDC2
Genetic Testing Registry CSDC2
NextProtQ9Y534 [Medical]
TSGene27254
GENETestsCSDC2
Huge Navigator CSDC2 [HugePedia]
snp3D : Map Gene to Disease27254
BioCentury BCIQCSDC2
ClinGenCSDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27254
Chemical/Pharm GKB GenePA142672071
Clinical trialCSDC2
Miscellaneous
canSAR (ICR)CSDC2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSDC2
EVEXCSDC2
GoPubMedCSDC2
iHOPCSDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:26 CET 2017

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