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CSDE1 (cold shock domain containing E1)

Identity

Alias (NCBI)D1S155E
UNR
HGNC (Hugo) CSDE1
HGNC Alias symbD1S155E
UNR
HGNC Alias nameupstream of NRAS
HGNC Previous namecold shock domain containing E1, RNA binding
LocusID (NCBI) 7812
Atlas_Id 55574
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 114716916 and ends at 114757984 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AP4B1 (1p13.2) / CSDE1 (1p13.2)ARHGEF10L (1p36.13) / CSDE1 (1p13.2)BAZ2A (12q13.3) / CSDE1 (1p13.2)
CSDE1 (1p13.2) / CLASP1 (2q14.2)CSDE1 (1p13.2) / CSDE1 (1p13.2)CSDE1 (1p13.2) / DDX27 (20q13.13)
CSDE1 (1p13.2) / RBFOX1 (16p13.3)CSDE1 (1p13.2) / RPS6 (9p22.1)CSDE1 (1p13.2) / ZNFX1 (20q13.13)
ERBB4 (2q34) / CSDE1 (1p13.2)H2AFZ (4q23) / CSDE1 (1p13.2)RPS27L (15q22.2) / CSDE1 (1p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CSDE1   29905
Cards
Entrez_Gene (NCBI)CSDE1    cold shock domain containing E1
AliasesD1S155E; UNR
GeneCards (Weizmann)CSDE1
Ensembl hg19 (Hinxton)ENSG00000009307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000009307 [Gene_View]  ENSG00000009307 [Sequence]  chr1:114716916-114757984 [Contig_View]  CSDE1 [Vega]
ICGC DataPortalENSG00000009307
TCGA cBioPortalCSDE1
AceView (NCBI)CSDE1
Genatlas (Paris)CSDE1
SOURCE (Princeton)CSDE1
Genetics Home Reference (NIH)CSDE1
Genomic and cartography
GoldenPath hg38 (UCSC)CSDE1  -     chr1:114716916-114757984 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSDE1  -     1p13.2   [Description]    (hg19-Feb_2009)
GoldenPathCSDE1 - 1p13.2 [CytoView hg19]  CSDE1 - 1p13.2 [CytoView hg38]
ImmunoBaseENSG00000009307
Genome Data Viewer NCBICSDE1 [Mapview hg19]  
OMIM191510   
Gene and transcription
Genbank (Entrez)AB020692 AF070542 AF077054 AK022516 AK022528
RefSeq transcript (Entrez)NM_001007553 NM_001130523 NM_001242891 NM_001242892 NM_001242893 NM_007158
Consensus coding sequences : CCDS (NCBI)CSDE1
Gene ExpressionCSDE1 [ NCBI-GEO ]   CSDE1 [ EBI - ARRAY_EXPRESS ]   CSDE1 [ SEEK ]   CSDE1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSDE1 [ Firebrowse - Broad ]
GenevisibleExpression of CSDE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7812
GTEX Portal (Tissue expression)CSDE1
Human Protein AtlasENSG00000009307-CSDE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSDE1
Human Protein Atlas [tissue]ENSG00000009307-CSDE1 [tissue]
HPRD15949
Protein Interaction databases
BioGRIDCSDE1
STRING (EMBL)CSDE1
ZODIACCSDE1
Ontologies - Pathways
Litterature
PubMed107 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCSDE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:05:20 CEST 2021

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