Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CSF2RA (colony stimulating factor 2 receptor subunit alpha)

Identity

Alias (NCBI)CD116
CDw116
CSF2R
CSF2RAX
CSF2RAY
CSF2RX
CSF2RY
GM-CSF-R-alpha
GMCSFR
GMCSFR-alpha
GMR
GMR-alpha
SMDP4
alphaGMR
HGNC (Hugo) CSF2RA
HGNC Alias symbCD116
alphaGMR
HGNC Alias namealpha-GM-CSF receptor
HGNC Previous nameCSF2R
HGNC Previous namecolony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
LocusID (NCBI) 1438
Atlas_Id 40162
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 1268814 and ends at 1310368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSF2RA (Xp22.33) / CRLF2 (Xp22.33)CSF2RA (Xp22.33) / IL3RA (Xp22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  del(X)(p22p22) P2RY8/CRLF2::del(Y)(p11p11) P2RY8/CRLF2
del(X)(p22p22) CSF2RA/CRLF2

External links

Nomenclature
HGNC (Hugo)CSF2RA   2435
LRG (Locus Reference Genomic)LRG_186
Cards
Entrez_Gene (NCBI)CSF2RA    colony stimulating factor 2 receptor subunit alpha
AliasesCD116; CDw116; CSF2R; CSF2RAX; 
CSF2RAY; CSF2RX; CSF2RY; GM-CSF-R-alpha; GMCSFR; GMCSFR-alpha; GMR; GMR-alpha; SMDP4; alphaGMR
GeneCards (Weizmann)CSF2RA
Ensembl hg19 (Hinxton)ENSG00000198223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198223 [Gene_View]  ENSG00000198223 [Sequence]  chrX:1268814-1310368 [Contig_View]  CSF2RA [Vega]
ICGC DataPortalENSG00000198223
TCGA cBioPortalCSF2RA
AceView (NCBI)CSF2RA
Genatlas (Paris)CSF2RA
SOURCE (Princeton)CSF2RA
Genetics Home Reference (NIH)CSF2RA
Genomic and cartography
GoldenPath hg38 (UCSC)CSF2RA  -     chrX:1268814-1310368 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSF2RA  -     Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPathCSF2RA - Xp22.33 [CytoView hg19]  CSF2RA - Xp22.33 [CytoView hg38]
ImmunoBaseENSG00000198223
genome Data Viewer NCBICSF2RA [Mapview hg19]  
OMIM300770   306250   425000   
Gene and transcription
Genbank (Entrez)AK293086 AK301395 AK309630 AL833597 BC002635
RefSeq transcript (Entrez)NM_001161529 NM_001161530 NM_001161531 NM_001161532 NM_001379153 NM_001379154 NM_001379155 NM_001379156 NM_001379158 NM_001379159 NM_001379160 NM_001379161 NM_001379162 NM_001379163 NM_001379164 NM_001379165 NM_001379166 NM_001379167 NM_001379168 NM_001379169 NM_006140 NM_172245 NM_172246 NM_172247 NM_172248 NM_172249
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSF2RA
Alternative Splicing GalleryENSG00000198223
Gene ExpressionCSF2RA [ NCBI-GEO ]   CSF2RA [ EBI - ARRAY_EXPRESS ]   CSF2RA [ SEEK ]   CSF2RA [ MEM ]
Gene Expression Viewer (FireBrowse)CSF2RA [ Firebrowse - Broad ]
GenevisibleExpression of CSF2RA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1438
GTEX Portal (Tissue expression)CSF2RA
Human Protein AtlasENSG00000198223-CSF2RA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSF2RA
Blocks (Seattle)CSF2RA
Human Protein Atlas [tissue]ENSG00000198223-CSF2RA [tissue]
HPRD02381
IPIIPI00012009   IPI00219208   IPI00172409   IPI00219210   IPI00219211   IPI00219212   IPI00855945   IPI00930220   IPI00977657   IPI00640876   
Protein Interaction databases
BioGRIDCSF2RA
STRING (EMBL)CSF2RA
ZODIACCSF2RA
Ontologies - Pathways
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCSF2RA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:17:04 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.