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CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1)

Identity

Alias (NCBI)CSGalNAcT-1
ChGn
ChGn-1
SDJLABA
beta4GalNAcT
HGNC (Hugo) CSGALNACT1
HGNC Alias symbCSGalNAcT-1
FLJ11264
ChGn
HGNC Alias namechondroitin beta1,4 N-acetylgalactosaminyltransferase
 glucuronylgalactosylproteoglycan 4-beta-N- acetylgalactosaminyltransferase
LocusID (NCBI) 55790
Atlas_Id 54241
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 19404161 and ends at 19682583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COPG2 (7q32.2) / CSGALNACT1 (8p21.3)CSGALNACT1 (8p21.3) / CSGALNACT1 (8p21.3)CSGALNACT1 (8p21.3) / LARGE (22q12.3)
CSGALNACT1 (8p21.3) / RNF144B (6p22.3)CSGALNACT1 (8p21.3) / TMEM150A (2p11.2)MSRA (8p23.1) / CSGALNACT1 (8p21.3)
PSD3 (8p22) / CSGALNACT1 (8p21.3)CSGALNACT1 8p21.3 / TMEM150A 2p11.2MSRA 8p23.1 / CSGALNACT1 8p21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CSGALNACT1   24290
Cards
Entrez_Gene (NCBI)CSGALNACT1    chondroitin sulfate N-acetylgalactosaminyltransferase 1
AliasesCSGalNAcT-1; ChGn; ChGn-1; SDJLABA; 
beta4GalNAcT
GeneCards (Weizmann)CSGALNACT1
Ensembl hg19 (Hinxton)ENSG00000147408 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147408 [Gene_View]  ENSG00000147408 [Sequence]  chr8:19404161-19682583 [Contig_View]  CSGALNACT1 [Vega]
ICGC DataPortalENSG00000147408
TCGA cBioPortalCSGALNACT1
AceView (NCBI)CSGALNACT1
Genatlas (Paris)CSGALNACT1
SOURCE (Princeton)CSGALNACT1
Genetics Home Reference (NIH)CSGALNACT1
Genomic and cartography
GoldenPath hg38 (UCSC)CSGALNACT1  -     chr8:19404161-19682583 -  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSGALNACT1  -     8p21.3   [Description]    (hg19-Feb_2009)
GoldenPathCSGALNACT1 - 8p21.3 [CytoView hg19]  CSGALNACT1 - 8p21.3 [CytoView hg38]
ImmunoBaseENSG00000147408
Genome Data Viewer NCBICSGALNACT1 [Mapview hg19]  
OMIM616615   618870   
Gene and transcription
Genbank (Entrez)AB071403 AB081516 AK002124 AK002126 AK023822
RefSeq transcript (Entrez)NM_001130518 NM_001354475 NM_001354476 NM_001354477 NM_001354480 NM_001354481 NM_001354483 NM_001354484 NM_001354485 NM_001354487 NM_001354488 NM_001354489 NM_001354490 NM_001354491 NM_001354492 NM_001354494 NM_001354495 NM_001354496 NM_001354497 NM_001354498 NM_001354499 NM_018371
Consensus coding sequences : CCDS (NCBI)CSGALNACT1
Gene ExpressionCSGALNACT1 [ NCBI-GEO ]   CSGALNACT1 [ EBI - ARRAY_EXPRESS ]   CSGALNACT1 [ SEEK ]   CSGALNACT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSGALNACT1 [ Firebrowse - Broad ]
GenevisibleExpression of CSGALNACT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55790
GTEX Portal (Tissue expression)CSGALNACT1
Human Protein AtlasENSG00000147408-CSGALNACT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDX6
PhosPhoSitePlusQ8TDX6
Domains : Interpro (EBI)Chond_GalNAc    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)CHGN (PF05679)   
Domain families : Pfam (NCBI)pfam05679   
Conserved Domain (NCBI)CSGALNACT1
SuperfamilyQ8TDX6
AlphaFold pdb e-kbQ8TDX6   
Human Protein Atlas [tissue]ENSG00000147408-CSGALNACT1 [tissue]
HPRD13114
Protein Interaction databases
DIP (DOE-UCLA)Q8TDX6
IntAct (EBI)Q8TDX6
BioGRIDCSGALNACT1
STRING (EMBL)CSGALNACT1
ZODIACCSGALNACT1
Ontologies - Pathways
QuickGOQ8TDX6
Ontology : AmiGOGolgi membrane  acetylgalactosaminyltransferase activity  acetylgalactosaminyltransferase activity  acetylgalactosaminyltransferase activity  peptidoglycan glycosyltransferase activity  heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process  glucuronosyltransferase activity  UDP-N-acetylgalactosamine metabolic process  proteoglycan biosynthetic process  integral component of Golgi membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  heparin biosynthetic process  Golgi cisterna membrane  UDP-glucuronate metabolic process  metal ion binding  glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  chondroitin sulfate proteoglycan biosynthetic process  dermatan sulfate proteoglycan biosynthetic process  chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process  
Ontology : EGO-EBIGolgi membrane  acetylgalactosaminyltransferase activity  acetylgalactosaminyltransferase activity  acetylgalactosaminyltransferase activity  peptidoglycan glycosyltransferase activity  heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process  glucuronosyltransferase activity  UDP-N-acetylgalactosamine metabolic process  proteoglycan biosynthetic process  integral component of Golgi membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  heparin biosynthetic process  Golgi cisterna membrane  UDP-glucuronate metabolic process  metal ion binding  glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity  chondroitin sulfate proteoglycan biosynthetic process  dermatan sulfate proteoglycan biosynthetic process  chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCSGALNACT1
Atlas of Cancer Signalling NetworkCSGALNACT1
Wikipedia pathwaysCSGALNACT1
Orthology - Evolution
OrthoDB55790
GeneTree (enSembl)ENSG00000147408
Phylogenetic Trees/Animal Genes : TreeFamCSGALNACT1
Homologs : HomoloGeneCSGALNACT1
Homology/Alignments : Family Browser (UCSC)CSGALNACT1
Gene fusions - Rearrangements
Fusion : MitelmanCSGALNACT1/TMEM150A [8p21.3/2p11.2]  
Fusion : MitelmanMSRA/CSGALNACT1 [8p23.1/8p21.3]  
Fusion : MitelmanPSD3/CSGALNACT1 [8p22/8p21.3]  
Fusion : QuiverCSGALNACT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSGALNACT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSGALNACT1
dbVarCSGALNACT1
ClinVarCSGALNACT1
MonarchCSGALNACT1
1000_GenomesCSGALNACT1 
Exome Variant ServerCSGALNACT1
GNOMAD BrowserENSG00000147408
Varsome BrowserCSGALNACT1
ACMGCSGALNACT1 variants
VarityQ8TDX6
Genomic Variants (DGV)CSGALNACT1 [DGVbeta]
DECIPHERCSGALNACT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSGALNACT1 
Mutations
ICGC Data PortalCSGALNACT1 
TCGA Data PortalCSGALNACT1 
Broad Tumor PortalCSGALNACT1
OASIS PortalCSGALNACT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSGALNACT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCSGALNACT1
Mutations and Diseases : HGMDCSGALNACT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCSGALNACT1
DgiDB (Drug Gene Interaction Database)CSGALNACT1
DoCM (Curated mutations)CSGALNACT1
CIViC (Clinical Interpretations of Variants in Cancer)CSGALNACT1
Cancer3DCSGALNACT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616615    618870   
Orphanet
DisGeNETCSGALNACT1
MedgenCSGALNACT1
Genetic Testing Registry CSGALNACT1
NextProtQ8TDX6 [Medical]
GENETestsCSGALNACT1
Target ValidationCSGALNACT1
Huge Navigator CSGALNACT1 [HugePedia]
ClinGenCSGALNACT1
Clinical trials, drugs, therapy
MyCancerGenomeCSGALNACT1
Protein Interactions : CTDCSGALNACT1
Pharm GKB GenePA162382829
PharosQ8TDX6
Clinical trialCSGALNACT1
Miscellaneous
canSAR (ICR)CSGALNACT1
HarmonizomeCSGALNACT1
DataMed IndexCSGALNACT1
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCSGALNACT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:05:21 CEST 2021

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