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CSN1S1 (casein alpha s1)

Identity

Alias_namesCASA
CSN1
casein, alpha
Other alias
HGNC (Hugo) CSN1S1
LocusID (NCBI) 1446
Atlas_Id 62126
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 69931081 and ends at 69946570 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSN1S1   2445
Cards
Entrez_Gene (NCBI)CSN1S1  1446  casein alpha s1
AliasesCASA; CSN1
GeneCards (Weizmann)CSN1S1
Ensembl hg19 (Hinxton)ENSG00000126545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126545 [Gene_View]  chr4:69931081-69946570 [Contig_View]  CSN1S1 [Vega]
ICGC DataPortalENSG00000126545
TCGA cBioPortalCSN1S1
AceView (NCBI)CSN1S1
Genatlas (Paris)CSN1S1
WikiGenes1446
SOURCE (Princeton)CSN1S1
Genetics Home Reference (NIH)CSN1S1
Genomic and cartography
GoldenPath hg38 (UCSC)CSN1S1  -     chr4:69931081-69946570 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSN1S1  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblCSN1S1 - 4q13.3 [CytoView hg19]  CSN1S1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBICSN1S1 [Mapview hg19]  CSN1S1 [Mapview hg38]
OMIM115450   
Gene and transcription
Genbank (Entrez)BC128227 BC128228 BG217918 DQ064604 U23157
RefSeq transcript (Entrez)NM_001025104 NM_001890
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSN1S1
Cluster EST : UnigeneHs.3155 [ NCBI ]
CGAP (NCI)Hs.3155
Alternative Splicing GalleryENSG00000126545
Gene ExpressionCSN1S1 [ NCBI-GEO ]   CSN1S1 [ EBI - ARRAY_EXPRESS ]   CSN1S1 [ SEEK ]   CSN1S1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSN1S1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1446
GTEX Portal (Tissue expression)CSN1S1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47710   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47710  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47710
Splice isoforms : SwissVarP47710
PhosPhoSitePlusP47710
Domaine pattern : Prosite (Expaxy)CASEIN_ALPHA_BETA (PS00306)   
Domains : Interpro (EBI)Alpha-s1_casein    Casein_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSN1S1
DMDM Disease mutations1446
Blocks (Seattle)CSN1S1
SuperfamilyP47710
Human Protein AtlasENSG00000126545
Peptide AtlasP47710
HPRD00280
IPIIPI00328198   IPI00216119   IPI00479025   IPI01010636   IPI00607643   IPI00964081   IPI00964345   IPI00967276   
Protein Interaction databases
DIP (DOE-UCLA)P47710
IntAct (EBI)P47710
FunCoupENSG00000126545
BioGRIDCSN1S1
STRING (EMBL)CSN1S1
ZODIACCSN1S1
Ontologies - Pathways
QuickGOP47710
Ontology : AmiGOtransporter activity  extracellular region  transmembrane transport  
Ontology : EGO-EBItransporter activity  extracellular region  transmembrane transport  
NDEx NetworkCSN1S1
Atlas of Cancer Signalling NetworkCSN1S1
Wikipedia pathwaysCSN1S1
Orthology - Evolution
OrthoDB1446
GeneTree (enSembl)ENSG00000126545
Phylogenetic Trees/Animal Genes : TreeFamCSN1S1
HOVERGENP47710
HOGENOMP47710
Homologs : HomoloGeneCSN1S1
Homology/Alignments : Family Browser (UCSC)CSN1S1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSN1S1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSN1S1
dbVarCSN1S1
ClinVarCSN1S1
1000_GenomesCSN1S1 
Exome Variant ServerCSN1S1
ExAC (Exome Aggregation Consortium)CSN1S1 (select the gene name)
Genetic variants : HAPMAP1446
Genomic Variants (DGV)CSN1S1 [DGVbeta]
DECIPHERCSN1S1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSN1S1 
Mutations
ICGC Data PortalCSN1S1 
TCGA Data PortalCSN1S1 
Broad Tumor PortalCSN1S1
OASIS PortalCSN1S1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSN1S1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSN1S1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSN1S1
DgiDB (Drug Gene Interaction Database)CSN1S1
DoCM (Curated mutations)CSN1S1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSN1S1 (select a term)
intoGenCSN1S1
Cancer3DCSN1S1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM115450   
Orphanet
MedgenCSN1S1
Genetic Testing Registry CSN1S1
NextProtP47710 [Medical]
TSGene1446
GENETestsCSN1S1
Target ValidationCSN1S1
Huge Navigator CSN1S1 [HugePedia]
snp3D : Map Gene to Disease1446
BioCentury BCIQCSN1S1
ClinGenCSN1S1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1446
Chemical/Pharm GKB GenePA26948
Clinical trialCSN1S1
Miscellaneous
canSAR (ICR)CSN1S1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSN1S1
EVEXCSN1S1
GoPubMedCSN1S1
iHOPCSN1S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:27 CEST 2017

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