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CSN3 (casein kappa)

Identity

Alias_namesCSN10
casein
Other aliasCNS10
CSNK
KCA
HGNC (Hugo) CSN3
LocusID (NCBI) 1448
Atlas_Id 51182
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 71108333 and ends at 71117145 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSN3   2446
Cards
Entrez_Gene (NCBI)CSN3  1448  casein kappa
AliasesCNS10; CSN10; CSNK; KCA
GeneCards (Weizmann)CSN3
Ensembl hg19 (Hinxton)ENSG00000171209 [Gene_View]  chr4:71108333-71117145 [Contig_View]  CSN3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171209 [Gene_View]  chr4:71108333-71117145 [Contig_View]  CSN3 [Vega]
ICGC DataPortalENSG00000171209
TCGA cBioPortalCSN3
AceView (NCBI)CSN3
Genatlas (Paris)CSN3
WikiGenes1448
SOURCE (Princeton)CSN3
Genetics Home Reference (NIH)CSN3
Genomic and cartography
GoldenPath hg19 (UCSC)CSN3  -     chr4:71108333-71117145 +  4q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSN3  -     4q13.3   [Description]    (hg38-Dec_2013)
EnsemblCSN3 - 4q13.3 [CytoView hg19]  CSN3 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBICSN3 [Mapview hg19]  CSN3 [Mapview hg38]
OMIM601695   
Gene and transcription
Genbank (Entrez)BC010935 BG191674 HQ448340 M73628 X66417
RefSeq transcript (Entrez)NM_005212
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CSN3
Cluster EST : UnigeneHs.54415 [ NCBI ]
CGAP (NCI)Hs.54415
Alternative Splicing GalleryENSG00000171209
Gene ExpressionCSN3 [ NCBI-GEO ]   CSN3 [ EBI - ARRAY_EXPRESS ]   CSN3 [ SEEK ]   CSN3 [ MEM ]
Gene Expression Viewer (FireBrowse)CSN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1448
GTEX Portal (Tissue expression)CSN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07498   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07498  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07498
Splice isoforms : SwissVarP07498
PhosPhoSitePlusP07498
Domains : Interpro (EBI)Casein_kappa   
Domain families : Pfam (Sanger)Casein_kappa (PF00997)   
Domain families : Pfam (NCBI)pfam00997   
Conserved Domain (NCBI)CSN3
DMDM Disease mutations1448
Blocks (Seattle)CSN3
SuperfamilyP07498
Human Protein AtlasENSG00000171209
Peptide AtlasP07498
HPRD03411
IPIIPI00294773   
Protein Interaction databases
DIP (DOE-UCLA)P07498
IntAct (EBI)P07498
FunCoupENSG00000171209
BioGRIDCSN3
STRING (EMBL)CSN3
ZODIACCSN3
Ontologies - Pathways
QuickGOP07498
Ontology : AmiGOmolecular_function  protein binding  extracellular region  extracellular space  lactation  protein stabilization  transmembrane transport  
Ontology : EGO-EBImolecular_function  protein binding  extracellular region  extracellular space  lactation  protein stabilization  transmembrane transport  
NDEx NetworkCSN3
Atlas of Cancer Signalling NetworkCSN3
Wikipedia pathwaysCSN3
Orthology - Evolution
OrthoDB1448
GeneTree (enSembl)ENSG00000171209
Phylogenetic Trees/Animal Genes : TreeFamCSN3
HOVERGENP07498
HOGENOMP07498
Homologs : HomoloGeneCSN3
Homology/Alignments : Family Browser (UCSC)CSN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSN3
dbVarCSN3
ClinVarCSN3
1000_GenomesCSN3 
Exome Variant ServerCSN3
ExAC (Exome Aggregation Consortium)CSN3 (select the gene name)
Genetic variants : HAPMAP1448
Genomic Variants (DGV)CSN3 [DGVbeta]
DECIPHER (Syndromes)4:71108333-71117145  ENSG00000171209
CONAN: Copy Number AnalysisCSN3 
Mutations
ICGC Data PortalCSN3 
TCGA Data PortalCSN3 
Broad Tumor PortalCSN3
OASIS PortalCSN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSN3
DgiDB (Drug Gene Interaction Database)CSN3
DoCM (Curated mutations)CSN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSN3 (select a term)
intoGenCSN3
Cancer3DCSN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601695   
Orphanet
MedgenCSN3
Genetic Testing Registry CSN3
NextProtP07498 [Medical]
TSGene1448
GENETestsCSN3
Huge Navigator CSN3 [HugePedia]
snp3D : Map Gene to Disease1448
BioCentury BCIQCSN3
ClinGenCSN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1448
Chemical/Pharm GKB GenePA26949
Clinical trialCSN3
Miscellaneous
canSAR (ICR)CSN3 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSN3
EVEXCSN3
GoPubMedCSN3
iHOPCSN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:54 CET 2017

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