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CSNK1D (casein kinase 1 delta)

Identity

Alias_namescasein kinase 1
Alias_symbol (synonym)HCKID
CKID
CKIdelta
Other aliasASPS
FASPS2
HGNC (Hugo) CSNK1D
LocusID (NCBI) 1453
Atlas_Id 40169
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82242661 and ends at 82273718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP6V1G1 (9q32) / CSNK1D (17q25.3)CSNK1D (17q25.3) / CSNK1D (17q25.3)CSNK1D (17q25.3) / FN1 (2q35)
CSNK1D (17q25.3) / POLR2E (19p13.3)CSNK1D (17q25.3) / SCPEP1 (17q22)CSNK1D (17q25.3) / SECTM1 (17q25.3)
CSNK1D (17q25.3) / WNK1 (12p13.33)DDIT4 (10q22.1) / CSNK1D (17q25.3)DPH1 (17p13.3) / CSNK1D (17q25.3)
EEF2 (19p13.3) / CSNK1D (17q25.3)GSN (9q33.2) / CSNK1D (17q25.3)MAF1 (8q24.3) / CSNK1D (17q25.3)
MAL (2q11.1) / CSNK1D (17q25.3)PGP (16p13.3) / CSNK1D (17q25.3)SCAMP2 (15q24.1) / CSNK1D (17q25.3)
TMEM38A (19p13.11) / CSNK1D (17q25.3)TRIM2 (4q31.3) / CSNK1D (17q25.3)XYLT1 (16p12.3) / CSNK1D (17q25.3)
CSNK1D 17q25.3 / SCPEP1 17q22CSNK1D 17q25.3 / SECTM1 17q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSNK1D   2452
Cards
Entrez_Gene (NCBI)CSNK1D  1453  casein kinase 1 delta
AliasesASPS; CKIdelta; FASPS2; HCKID
GeneCards (Weizmann)CSNK1D
Ensembl hg19 (Hinxton)ENSG00000141551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141551 [Gene_View]  chr17:82242661-82273718 [Contig_View]  CSNK1D [Vega]
ICGC DataPortalENSG00000141551
TCGA cBioPortalCSNK1D
AceView (NCBI)CSNK1D
Genatlas (Paris)CSNK1D
WikiGenes1453
SOURCE (Princeton)CSNK1D
Genetics Home Reference (NIH)CSNK1D
Genomic and cartography
GoldenPath hg38 (UCSC)CSNK1D  -     chr17:82242661-82273718 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSNK1D  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCSNK1D - 17q25.3 [CytoView hg19]  CSNK1D - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICSNK1D [Mapview hg19]  CSNK1D [Mapview hg38]
OMIM600864   615224   
Gene and transcription
Genbank (Entrez)AA825280 AB091044 AB209463 AK096950 AK128863
RefSeq transcript (Entrez)NM_001893 NM_139062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSNK1D
Cluster EST : UnigeneHs.631725 [ NCBI ]
CGAP (NCI)Hs.631725
Alternative Splicing GalleryENSG00000141551
Gene ExpressionCSNK1D [ NCBI-GEO ]   CSNK1D [ EBI - ARRAY_EXPRESS ]   CSNK1D [ SEEK ]   CSNK1D [ MEM ]
Gene Expression Viewer (FireBrowse)CSNK1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1453
GTEX Portal (Tissue expression)CSNK1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48730   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48730  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48730
Splice isoforms : SwissVarP48730
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusP48730
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CSNK1D
DMDM Disease mutations1453
Blocks (Seattle)CSNK1D
PDB (SRS)3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
PDB (PDBSum)3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
PDB (IMB)3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
PDB (RSDB)3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
Structural Biology KnowledgeBase3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
SCOP (Structural Classification of Proteins)3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
CATH (Classification of proteins structures)3UYS    3UYT    3UZP    4HGT    4HNF    4KB8    4KBA    4KBC    4KBK    4TN6    4TW9    4TWC    5IH4    5IH5    5IH6   
SuperfamilyP48730
Human Protein AtlasENSG00000141551
Peptide AtlasP48730
HPRD02920
IPIIPI00011102   IPI00234463   IPI00910946   IPI00556134   IPI01012657   
Protein Interaction databases
DIP (DOE-UCLA)P48730
IntAct (EBI)P48730
FunCoupENSG00000141551
BioGRIDCSNK1D
STRING (EMBL)CSNK1D
ZODIACCSNK1D
Ontologies - Pathways
QuickGOP48730
Ontology : AmiGOG2/M transition of mitotic cell cycle  Golgi membrane  positive regulation of protein phosphorylation  glycoprotein binding  protein kinase activity  protein kinase activity  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  Golgi apparatus  centrosome  spindle  cytosol  spindle microtubule  plasma membrane  rRNA processing  protein phosphorylation  protein phosphorylation  endocytosis  microtubule nucleation  Golgi organization  regulation of cell shape  Wnt signaling pathway  peptidyl-serine phosphorylation  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  circadian regulation of gene expression  endoplasmic reticulum-Golgi intermediate compartment membrane  protein localization to Golgi apparatus  peptide binding  regulation of circadian rhythm  neuron projection  cadherin binding  COPII vesicle coating  perinuclear region of cytoplasm  tau-protein kinase activity  spindle assembly  protein localization to cilium  protein localization to centrosome  positive regulation of canonical Wnt signaling pathway  ciliary basal body docking  positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation  non-motile cilium assembly  cellular response to nerve growth factor stimulus  positive regulation of non-canonical Wnt signaling pathway  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  Golgi membrane  positive regulation of protein phosphorylation  glycoprotein binding  protein kinase activity  protein kinase activity  protein kinase activity  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleus  nucleoplasm  Golgi apparatus  centrosome  spindle  cytosol  spindle microtubule  plasma membrane  rRNA processing  protein phosphorylation  protein phosphorylation  endocytosis  microtubule nucleation  Golgi organization  regulation of cell shape  Wnt signaling pathway  peptidyl-serine phosphorylation  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  circadian regulation of gene expression  endoplasmic reticulum-Golgi intermediate compartment membrane  protein localization to Golgi apparatus  peptide binding  regulation of circadian rhythm  neuron projection  cadherin binding  COPII vesicle coating  perinuclear region of cytoplasm  tau-protein kinase activity  spindle assembly  protein localization to cilium  protein localization to centrosome  positive regulation of canonical Wnt signaling pathway  ciliary basal body docking  positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation  non-motile cilium assembly  cellular response to nerve growth factor stimulus  positive regulation of non-canonical Wnt signaling pathway  
Pathways : BIOCARTARegulation of ck1/cdk5 by type 1 glutamate receptors [Genes]   
Pathways : KEGGHedgehog signaling pathway    Hippo signaling pathway    Gap junction    Circadian rhythm   
NDEx NetworkCSNK1D
Atlas of Cancer Signalling NetworkCSNK1D
Wikipedia pathwaysCSNK1D
Orthology - Evolution
OrthoDB1453
GeneTree (enSembl)ENSG00000141551
Phylogenetic Trees/Animal Genes : TreeFamCSNK1D
HOVERGENP48730
HOGENOMP48730
Homologs : HomoloGeneCSNK1D
Homology/Alignments : Family Browser (UCSC)CSNK1D
Gene fusions - Rearrangements
Fusion : MitelmanCSNK1D/POLR2E [17q25.3/19p13.3]  
Fusion : MitelmanCSNK1D/SCPEP1 [17q25.3/17q22]  [t(17;17)(q22;q25)]  
Fusion : MitelmanCSNK1D/SECTM1 [17q25.3/17q25.3]  [t(17;17)(q25;q25)]  
Fusion: TCGACSNK1D 17q25.3 SCPEP1 17q22 LUSC
Fusion: TCGACSNK1D 17q25.3 SECTM1 17q25.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSNK1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSNK1D
dbVarCSNK1D
ClinVarCSNK1D
1000_GenomesCSNK1D 
Exome Variant ServerCSNK1D
ExAC (Exome Aggregation Consortium)CSNK1D (select the gene name)
Genetic variants : HAPMAP1453
Genomic Variants (DGV)CSNK1D [DGVbeta]
DECIPHERCSNK1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSNK1D 
Mutations
ICGC Data PortalCSNK1D 
TCGA Data PortalCSNK1D 
Broad Tumor PortalCSNK1D
OASIS PortalCSNK1D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCSNK1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSNK1D
DgiDB (Drug Gene Interaction Database)CSNK1D
DoCM (Curated mutations)CSNK1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSNK1D (select a term)
intoGenCSNK1D
Cancer3DCSNK1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600864    615224   
Orphanet17568   
MedgenCSNK1D
Genetic Testing Registry CSNK1D
NextProtP48730 [Medical]
TSGene1453
GENETestsCSNK1D
Target ValidationCSNK1D
Huge Navigator CSNK1D [HugePedia]
snp3D : Map Gene to Disease1453
BioCentury BCIQCSNK1D
ClinGenCSNK1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1453
Chemical/Pharm GKB GenePA26952
Clinical trialCSNK1D
Miscellaneous
canSAR (ICR)CSNK1D (select the gene name)
Probes
Litterature
PubMed111 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSNK1D
EVEXCSNK1D
GoPubMedCSNK1D
iHOPCSNK1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:50:47 CEST 2017

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