Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CSNK1G1 (casein kinase 1 gamma 1)

Identity

Alias_namescasein kinase 1
Alias_symbol (synonym)CK1gamma1
Other alias
HGNC (Hugo) CSNK1G1
LocusID (NCBI) 53944
Atlas_Id 43218
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64165517 and ends at 64356259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSNK1G1 (15q22.31) / CBX3 (7p15.2)CSNK1G1 (15q22.31) / FADS3 (11q12.2)CSNK1G1 (15q22.31) / TRA2B (3q27.2)
DPYD (1p21.3) / CSNK1G1 (15q22.31)HERC1 (15q22.31) / CSNK1G1 (15q22.31)DPYD 1p21.3 / CSNK1G1 15q22.31
HERC1 15q22.31 / CSNK1G1 15q22.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSNK1G1   2454
Cards
Entrez_Gene (NCBI)CSNK1G1  53944  casein kinase 1 gamma 1
AliasesCK1gamma1
GeneCards (Weizmann)CSNK1G1
Ensembl hg19 (Hinxton)ENSG00000169118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169118 [Gene_View]  chr15:64165517-64356259 [Contig_View]  CSNK1G1 [Vega]
ICGC DataPortalENSG00000169118
TCGA cBioPortalCSNK1G1
AceView (NCBI)CSNK1G1
Genatlas (Paris)CSNK1G1
WikiGenes53944
SOURCE (Princeton)CSNK1G1
Genetics Home Reference (NIH)CSNK1G1
Genomic and cartography
GoldenPath hg38 (UCSC)CSNK1G1  -     chr15:64165517-64356259 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSNK1G1  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblCSNK1G1 - 15q22.31 [CytoView hg19]  CSNK1G1 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBICSNK1G1 [Mapview hg19]  CSNK1G1 [Mapview hg38]
OMIM606274   
Gene and transcription
Genbank (Entrez)AB042562 AB042563 AF223357 AK023779 AK025179
RefSeq transcript (Entrez)NM_001329605 NM_001329606 NM_001329607 NM_022048
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSNK1G1
Cluster EST : UnigeneHs.646508 [ NCBI ]
CGAP (NCI)Hs.646508
Alternative Splicing GalleryENSG00000169118
Gene ExpressionCSNK1G1 [ NCBI-GEO ]   CSNK1G1 [ EBI - ARRAY_EXPRESS ]   CSNK1G1 [ SEEK ]   CSNK1G1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSNK1G1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53944
GTEX Portal (Tissue expression)CSNK1G1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCP0
Splice isoforms : SwissVarQ9HCP0
PhosPhoSitePlusQ9HCP0
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Casein_kinase-1_gamma_C    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)CK1gamma_C (PF12605)    Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam12605    pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CSNK1G1
DMDM Disease mutations53944
Blocks (Seattle)CSNK1G1
PDB (SRS)2CMW   
PDB (PDBSum)2CMW   
PDB (IMB)2CMW   
PDB (RSDB)2CMW   
Structural Biology KnowledgeBase2CMW   
SCOP (Structural Classification of Proteins)2CMW   
CATH (Classification of proteins structures)2CMW   
SuperfamilyQ9HCP0
Human Protein AtlasENSG00000169118
Peptide AtlasQ9HCP0
IPIIPI00219823   IPI01013150   IPI00791893   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCP0
IntAct (EBI)Q9HCP0
FunCoupENSG00000169118
BioGRIDCSNK1G1
STRING (EMBL)CSNK1G1
ZODIACCSNK1G1
Ontologies - Pathways
QuickGOQ9HCP0
Ontology : AmiGOprotein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  cytosol  endocytosis  regulation of cell shape  Wnt signaling pathway  peptidyl-serine phosphorylation  
Ontology : EGO-EBIprotein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  cytosol  endocytosis  regulation of cell shape  Wnt signaling pathway  peptidyl-serine phosphorylation  
Pathways : KEGGHedgehog signaling pathway   
NDEx NetworkCSNK1G1
Atlas of Cancer Signalling NetworkCSNK1G1
Wikipedia pathwaysCSNK1G1
Orthology - Evolution
OrthoDB53944
GeneTree (enSembl)ENSG00000169118
Phylogenetic Trees/Animal Genes : TreeFamCSNK1G1
HOVERGENQ9HCP0
HOGENOMQ9HCP0
Homologs : HomoloGeneCSNK1G1
Homology/Alignments : Family Browser (UCSC)CSNK1G1
Gene fusions - Rearrangements
Fusion : MitelmanDPYD/CSNK1G1 [1p21.3/15q22.31]  [t(1;15)(p21;q22)]  
Fusion : MitelmanHERC1/CSNK1G1 [15q22.31/15q22.31]  [t(15;15)(q22;q22)]  
Fusion: TCGADPYD 1p21.3 CSNK1G1 15q22.31 OV
Fusion: TCGAHERC1 15q22.31 CSNK1G1 15q22.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSNK1G1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSNK1G1
dbVarCSNK1G1
ClinVarCSNK1G1
1000_GenomesCSNK1G1 
Exome Variant ServerCSNK1G1
ExAC (Exome Aggregation Consortium)CSNK1G1 (select the gene name)
Genetic variants : HAPMAP53944
Genomic Variants (DGV)CSNK1G1 [DGVbeta]
DECIPHERCSNK1G1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSNK1G1 
Mutations
ICGC Data PortalCSNK1G1 
TCGA Data PortalCSNK1G1 
Broad Tumor PortalCSNK1G1
OASIS PortalCSNK1G1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCSNK1G1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSNK1G1
DgiDB (Drug Gene Interaction Database)CSNK1G1
DoCM (Curated mutations)CSNK1G1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSNK1G1 (select a term)
intoGenCSNK1G1
Cancer3DCSNK1G1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606274   
Orphanet
MedgenCSNK1G1
Genetic Testing Registry CSNK1G1
NextProtQ9HCP0 [Medical]
TSGene53944
GENETestsCSNK1G1
Target ValidationCSNK1G1
Huge Navigator CSNK1G1 [HugePedia]
snp3D : Map Gene to Disease53944
BioCentury BCIQCSNK1G1
ClinGenCSNK1G1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53944
Chemical/Pharm GKB GenePA26954
Clinical trialCSNK1G1
Miscellaneous
canSAR (ICR)CSNK1G1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSNK1G1
EVEXCSNK1G1
GoPubMedCSNK1G1
iHOPCSNK1G1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:58 CEST 2017

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