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CSNK1G2-AS1 (CSNK1G2 antisense RNA 1)

Identity

Alias_namesC19orf34
chromosome 19 open reading frame 34
CSNK1G2 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)MGC39696
Other alias
HGNC (Hugo) CSNK1G2-AS1
LocusID (NCBI) 255193
Atlas_Id 62132
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1952526 and ends at 1954546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSNK1G2-AS1   28604
Cards
Entrez_Gene (NCBI)CSNK1G2-AS1  255193  CSNK1G2 antisense RNA 1
AliasesC19orf34
GeneCards (Weizmann)CSNK1G2-AS1
Ensembl hg19 (Hinxton)ENSG00000180846 [Gene_View]  chr19:1952526-1954546 [Contig_View]  CSNK1G2-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180846 [Gene_View]  chr19:1952526-1954546 [Contig_View]  CSNK1G2-AS1 [Vega]
ICGC DataPortalENSG00000180846
TCGA cBioPortalCSNK1G2-AS1
AceView (NCBI)CSNK1G2-AS1
Genatlas (Paris)CSNK1G2-AS1
WikiGenes255193
SOURCE (Princeton)CSNK1G2-AS1
Genetics Home Reference (NIH)CSNK1G2-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)CSNK1G2-AS1  -     chr19:1952526-1954546 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSNK1G2-AS1  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblCSNK1G2-AS1 - 19p13.3 [CytoView hg19]  CSNK1G2-AS1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICSNK1G2-AS1 [Mapview hg19]  CSNK1G2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029585 BP368884 CV378841 DB337348 HG510236
RefSeq transcript (Entrez)NM_152771
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)CSNK1G2-AS1
Cluster EST : UnigeneHs.374717 [ NCBI ]
CGAP (NCI)Hs.374717
Alternative Splicing GalleryENSG00000180846
Gene ExpressionCSNK1G2-AS1 [ NCBI-GEO ]   CSNK1G2-AS1 [ EBI - ARRAY_EXPRESS ]   CSNK1G2-AS1 [ SEEK ]   CSNK1G2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSNK1G2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255193
GTEX Portal (Tissue expression)CSNK1G2-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCQ2
Splice isoforms : SwissVarQ8NCQ2
PhosPhoSitePlusQ8NCQ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSNK1G2-AS1
DMDM Disease mutations255193
Blocks (Seattle)CSNK1G2-AS1
SuperfamilyQ8NCQ2
Human Protein AtlasENSG00000180846
Peptide AtlasQ8NCQ2
HPRD16630
IPIIPI00168417   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCQ2
IntAct (EBI)Q8NCQ2
FunCoupENSG00000180846
BioGRIDCSNK1G2-AS1
STRING (EMBL)CSNK1G2-AS1
ZODIACCSNK1G2-AS1
Ontologies - Pathways
QuickGOQ8NCQ2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCSNK1G2-AS1
Atlas of Cancer Signalling NetworkCSNK1G2-AS1
Wikipedia pathwaysCSNK1G2-AS1
Orthology - Evolution
OrthoDB255193
GeneTree (enSembl)ENSG00000180846
Phylogenetic Trees/Animal Genes : TreeFamCSNK1G2-AS1
HOVERGENQ8NCQ2
HOGENOMQ8NCQ2
Homologs : HomoloGeneCSNK1G2-AS1
Homology/Alignments : Family Browser (UCSC)CSNK1G2-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSNK1G2-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSNK1G2-AS1
dbVarCSNK1G2-AS1
ClinVarCSNK1G2-AS1
1000_GenomesCSNK1G2-AS1 
Exome Variant ServerCSNK1G2-AS1
ExAC (Exome Aggregation Consortium)CSNK1G2-AS1 (select the gene name)
Genetic variants : HAPMAP255193
Genomic Variants (DGV)CSNK1G2-AS1 [DGVbeta]
DECIPHER (Syndromes)19:1952526-1954546  ENSG00000180846
CONAN: Copy Number AnalysisCSNK1G2-AS1 
Mutations
ICGC Data PortalCSNK1G2-AS1 
TCGA Data PortalCSNK1G2-AS1 
Broad Tumor PortalCSNK1G2-AS1
OASIS PortalCSNK1G2-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCSNK1G2-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSNK1G2-AS1
DgiDB (Drug Gene Interaction Database)CSNK1G2-AS1
DoCM (Curated mutations)CSNK1G2-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSNK1G2-AS1 (select a term)
intoGenCSNK1G2-AS1
Cancer3DCSNK1G2-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSNK1G2-AS1
Genetic Testing Registry CSNK1G2-AS1
NextProtQ8NCQ2 [Medical]
TSGene255193
GENETestsCSNK1G2-AS1
Huge Navigator CSNK1G2-AS1 [HugePedia]
snp3D : Map Gene to Disease255193
BioCentury BCIQCSNK1G2-AS1
ClinGenCSNK1G2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255193
Chemical/Pharm GKB GenePA134889166
Clinical trialCSNK1G2-AS1
Miscellaneous
canSAR (ICR)CSNK1G2-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSNK1G2-AS1
EVEXCSNK1G2-AS1
GoPubMedCSNK1G2-AS1
iHOPCSNK1G2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:29 CET 2017

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