Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CSNK1G2 (casein kinase 1 gamma 2)

Identity

Alias_namescasein kinase 1
Alias_symbol (synonym)CK1g2
Other alias
HGNC (Hugo) CSNK1G2
LocusID (NCBI) 1455
Atlas_Id 43219
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1941162 and ends at 1981337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSNK1G2 (19p13.3) / CSNK1G2 (19p13.3)CSNK1G2 (19p13.3) / NBPF11 (1q21.1)CSNK1G2 (19p13.3) / SCAMP4 (19p13.3)
DOT1L (19p13.3) / CSNK1G2 (19p13.3)MAST2 (1p34.1) / CSNK1G2 (19p13.3)

Note<TD>

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSNK1G2   2455
Cards
Entrez_Gene (NCBI)CSNK1G2  1455  casein kinase 1 gamma 2
AliasesCK1g2
GeneCards (Weizmann)CSNK1G2
Ensembl hg19 (Hinxton)ENSG00000133275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133275 [Gene_View]  chr19:1941162-1981337 [Contig_View]  CSNK1G2 [Vega]
ICGC DataPortalENSG00000133275
TCGA cBioPortalCSNK1G2
AceView (NCBI)CSNK1G2
Genatlas (Paris)CSNK1G2
WikiGenes1455
SOURCE (Princeton)CSNK1G2
Genetics Home Reference (NIH)CSNK1G2
Genomic and cartography
GoldenPath hg38 (UCSC)CSNK1G2  -     chr19:1941162-1981337 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSNK1G2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCSNK1G2 - 19p13.3 [CytoView hg19]  CSNK1G2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICSNK1G2 [Mapview hg19]  CSNK1G2 [Mapview hg38]
OMIM602214   
Gene and transcription
Genbank (Entrez)AB451278 AB451410 AF001177 AY007134 BC018693
RefSeq transcript (Entrez)NM_001319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSNK1G2
Cluster EST : UnigeneHs.651905 [ NCBI ]
CGAP (NCI)Hs.651905
Alternative Splicing GalleryENSG00000133275
Gene ExpressionCSNK1G2 [ NCBI-GEO ]   CSNK1G2 [ EBI - ARRAY_EXPRESS ]   CSNK1G2 [ SEEK ]   CSNK1G2 [ MEM ]
Gene Expression Viewer (FireBrowse)CSNK1G2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1455
GTEX Portal (Tissue expression)CSNK1G2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78368   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78368  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78368
Splice isoforms : SwissVarP78368
PhosPhoSitePlusP78368
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Casein_kinase-1_gamma_C    Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)CK1gamma_C (PF12605)    Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam12605    pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CSNK1G2
DMDM Disease mutations1455
Blocks (Seattle)CSNK1G2
PDB (SRS)2C47   
PDB (PDBSum)2C47   
PDB (IMB)2C47   
PDB (RSDB)2C47   
Structural Biology KnowledgeBase2C47   
SCOP (Structural Classification of Proteins)2C47   
CATH (Classification of proteins structures)2C47   
SuperfamilyP78368
Human Protein AtlasENSG00000133275
Peptide AtlasP78368
HPRD03738
IPIIPI00297767   IPI00184779   
Protein Interaction databases
DIP (DOE-UCLA)P78368
IntAct (EBI)P78368
FunCoupENSG00000133275
BioGRIDCSNK1G2
STRING (EMBL)CSNK1G2
ZODIACCSNK1G2
Ontologies - Pathways
QuickGOP78368
Ontology : AmiGOmagnesium ion binding  glycoprotein binding  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  cytosol  protein phosphorylation  endocytosis  signal transduction  regulation of cell shape  membrane  Wnt signaling pathway  peptidyl-serine phosphorylation  sphingolipid biosynthetic process  peptide binding  protein autophosphorylation  phosphoprotein binding  
Ontology : EGO-EBImagnesium ion binding  glycoprotein binding  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  cytosol  protein phosphorylation  endocytosis  signal transduction  regulation of cell shape  membrane  Wnt signaling pathway  peptidyl-serine phosphorylation  sphingolipid biosynthetic process  peptide binding  protein autophosphorylation  phosphoprotein binding  
Pathways : KEGGHedgehog signaling pathway   
NDEx NetworkCSNK1G2
Atlas of Cancer Signalling NetworkCSNK1G2
Wikipedia pathwaysCSNK1G2
Orthology - Evolution
OrthoDB1455
GeneTree (enSembl)ENSG00000133275
Phylogenetic Trees/Animal Genes : TreeFamCSNK1G2
HOVERGENP78368
HOGENOMP78368
Homologs : HomoloGeneCSNK1G2
Homology/Alignments : Family Browser (UCSC)CSNK1G2
Gene fusions - Rearrangements
Fusion : MitelmanDOT1L/CSNK1G2 [19p13.3/19p13.3]  [dup(19)(p13p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSNK1G2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSNK1G2
dbVarCSNK1G2
ClinVarCSNK1G2
1000_GenomesCSNK1G2 
Exome Variant ServerCSNK1G2
ExAC (Exome Aggregation Consortium)CSNK1G2 (select the gene name)
Genetic variants : HAPMAP1455
Genomic Variants (DGV)CSNK1G2 [DGVbeta]
DECIPHERCSNK1G2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSNK1G2 
Mutations
ICGC Data PortalCSNK1G2 
TCGA Data PortalCSNK1G2 
Broad Tumor PortalCSNK1G2
OASIS PortalCSNK1G2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSNK1G2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSNK1G2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSNK1G2
DgiDB (Drug Gene Interaction Database)CSNK1G2
DoCM (Curated mutations)CSNK1G2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSNK1G2 (select a term)
intoGenCSNK1G2
Cancer3DCSNK1G2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602214   
Orphanet
MedgenCSNK1G2
Genetic Testing Registry CSNK1G2
NextProtP78368 [Medical]
TSGene1455
GENETestsCSNK1G2
Target ValidationCSNK1G2
Huge Navigator CSNK1G2 [HugePedia]
snp3D : Map Gene to Disease1455
BioCentury BCIQCSNK1G2
ClinGenCSNK1G2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1455
Chemical/Pharm GKB GenePA26955
Clinical trialCSNK1G2
Miscellaneous
canSAR (ICR)CSNK1G2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSNK1G2
EVEXCSNK1G2
GoPubMedCSNK1G2
iHOPCSNK1G2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:03:58 CEST 2017

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