Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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CSNK2A2 (casein kinase 2, alpha prime polypeptide)

Identity

Other namesCK2A2
CSNK2A1
HGNC (Hugo) CSNK2A2
LocusID (NCBI) 1459
Location 16q21
Location_base_pair Starts at 58191812 and ends at 58231782 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CSNK2A2   2459
Cards
Entrez_Gene (NCBI)CSNK2A2  1459  casein kinase 2, alpha prime polypeptide
GeneCards (Weizmann)CSNK2A2
Ensembl hg19 (Hinxton)ENSG00000070770 [Gene_View]  chr16:58191812-58231782 [Contig_View]  CSNK2A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000070770 [Gene_View]  chr16:58191812-58231782 [Contig_View]  CSNK2A2 [Vega]
ICGC DataPortalENSG00000070770
cBioPortalCSNK2A2
AceView (NCBI)CSNK2A2
Genatlas (Paris)CSNK2A2
WikiGenes1459
SOURCE (Princeton)CSNK2A2
Genomic and cartography
GoldenPath hg19 (UCSC)CSNK2A2  -     chr16:58191812-58231782 -  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSNK2A2  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblCSNK2A2 - 16q21 [CytoView hg19]  CSNK2A2 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICSNK2A2 [Mapview hg19]  CSNK2A2 [Mapview hg38]
OMIM115442   
Gene and transcription
Genbank (Entrez)AI150700 AK090752 AK125922 BC008812 DQ893025
RefSeq transcript (Entrez)NM_001896
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CSNK2A2
Cluster EST : UnigeneHs.82201 [ NCBI ]
CGAP (NCI)Hs.82201
Alternative Splicing : Fast-db (Paris)GSHG0011878
Alternative Splicing GalleryENSG00000070770
Gene ExpressionCSNK2A2 [ NCBI-GEO ]     CSNK2A2 [ SEEK ]   CSNK2A2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19784 (Uniprot)
NextProtP19784  [Medical]
With graphics : InterProP19784
Splice isoforms : SwissVarP19784 (Swissvar)
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase    Ser/Thr_kinase_AS   
Related proteins : CluSTrP19784
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
DMDM Disease mutations1459
Blocks (Seattle)P19784
PDB (SRS)3E3B    3OFM    3U87   
PDB (PDBSum)3E3B    3OFM    3U87   
PDB (IMB)3E3B    3OFM    3U87   
PDB (RSDB)3E3B    3OFM    3U87   
Human Protein AtlasENSG00000070770
Peptide AtlasP19784
HPRD00279
IPIIPI00020602   
Protein Interaction databases
DIP (DOE-UCLA)P19784
IntAct (EBI)P19784
FunCoupENSG00000070770
BioGRIDCSNK2A2
IntegromeDBCSNK2A2
STRING (EMBL)CSNK2A2
Ontologies - Pathways
QuickGOP19784
Ontology : AmiGOmitotic cell cycle  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  protein phosphorylation  apoptotic process  axon guidance  Wnt signaling pathway  PcG protein complex  protein N-terminus binding  mitotic spindle checkpoint  
Ontology : EGO-EBImitotic cell cycle  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  protein phosphorylation  apoptotic process  axon guidance  Wnt signaling pathway  PcG protein complex  protein N-terminus binding  mitotic spindle checkpoint  
Pathways : KEGGRibosome biogenesis in eukaryotes    NF-kappa B signaling pathway    Wnt signaling pathway    Adherens junction    Tight junction    Measles    Herpes simplex infection    Epstein-Barr virus infection   
Protein Interaction DatabaseCSNK2A2
DoCM (Curated mutations)CSNK2A2
Wikipedia pathwaysCSNK2A2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCSNK2A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSNK2A2
dbVarCSNK2A2
ClinVarCSNK2A2
1000_GenomesCSNK2A2 
Exome Variant ServerCSNK2A2
SNP (GeneSNP Utah)CSNK2A2
SNP : HGBaseCSNK2A2
Genetic variants : HAPMAPCSNK2A2
Genomic Variants (DGV)CSNK2A2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000070770 
Somatic Mutations in Cancer : COSMICCSNK2A2 
CONAN: Copy Number AnalysisCSNK2A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:58191812-58231782
Mutations and Diseases : HGMDCSNK2A2
OMIM115442   
MedgenCSNK2A2
NextProtP19784 [Medical]
GENETestsCSNK2A2
Disease Genetic AssociationCSNK2A2
Huge Navigator CSNK2A2 [HugePedia]  CSNK2A2 [HugeCancerGEM]
snp3D : Map Gene to Disease1459
DGIdb (Drug Gene Interaction db)CSNK2A2
General knowledge
Homologs : HomoloGeneCSNK2A2
Homology/Alignments : Family Browser (UCSC)CSNK2A2
Phylogenetic Trees/Animal Genes : TreeFamCSNK2A2
Chemical/Protein Interactions : CTD1459
Chemical/Pharm GKB GenePA26959
Clinical trialCSNK2A2
Cancer Resource (Charite)ENSG00000070770
Other databases
Probes
Litterature
PubMed189 Pubmed reference(s) in Entrez
CoreMineCSNK2A2
GoPubMedCSNK2A2
iHOPCSNK2A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:07:41 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.