Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CSNK2A3 (casein kinase 2 alpha 3)

Identity

Alias_namesCSNK2A1P
casein kinase 2, alpha 1 polypeptide pseudogene
casein kinase 2, alpha 3 polypeptide
Other alias
HGNC (Hugo) CSNK2A3
LocusID (NCBI) 283106
Atlas_Id 62133
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 11351942 and ends at 11353357 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSNK2A3   2458
Cards
Entrez_Gene (NCBI)CSNK2A3  283106  casein kinase 2 alpha 3
AliasesCSNK2A1P
GeneCards (Weizmann)CSNK2A3
Ensembl hg19 (Hinxton)ENSG00000254598 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254598 [Gene_View]  chr11:11351942-11353357 [Contig_View]  CSNK2A3 [Vega]
ICGC DataPortalENSG00000254598
TCGA cBioPortalCSNK2A3
AceView (NCBI)CSNK2A3
Genatlas (Paris)CSNK2A3
WikiGenes283106
SOURCE (Princeton)CSNK2A3
Genetics Home Reference (NIH)CSNK2A3
Genomic and cartography
GoldenPath hg38 (UCSC)CSNK2A3  -     chr11:11351942-11353357 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSNK2A3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblCSNK2A3 - 11p15.4 [CytoView hg19]  CSNK2A3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBICSNK2A3 [Mapview hg19]  CSNK2A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY112721
RefSeq transcript (Entrez)NM_001256686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSNK2A3
Cluster EST : UnigeneHs.741126 [ NCBI ]
CGAP (NCI)Hs.741126
Alternative Splicing GalleryENSG00000254598
Gene ExpressionCSNK2A3 [ NCBI-GEO ]   CSNK2A3 [ EBI - ARRAY_EXPRESS ]   CSNK2A3 [ SEEK ]   CSNK2A3 [ MEM ]
Gene Expression Viewer (FireBrowse)CSNK2A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283106
GTEX Portal (Tissue expression)CSNK2A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEV1
Splice isoforms : SwissVarQ8NEV1
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ8NEV1
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)CSNK2A3
DMDM Disease mutations283106
Blocks (Seattle)CSNK2A3
SuperfamilyQ8NEV1
Human Protein AtlasENSG00000254598
Peptide AtlasQ8NEV1
IPIIPI00784195   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEV1
IntAct (EBI)Q8NEV1
FunCoupENSG00000254598
BioGRIDCSNK2A3
STRING (EMBL)CSNK2A3
ZODIACCSNK2A3
Ontologies - Pathways
QuickGOQ8NEV1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCSNK2A3
Atlas of Cancer Signalling NetworkCSNK2A3
Wikipedia pathwaysCSNK2A3
Orthology - Evolution
OrthoDB283106
GeneTree (enSembl)ENSG00000254598
Phylogenetic Trees/Animal Genes : TreeFamCSNK2A3
HOVERGENQ8NEV1
HOGENOMQ8NEV1
Homologs : HomoloGeneCSNK2A3
Homology/Alignments : Family Browser (UCSC)CSNK2A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSNK2A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSNK2A3
dbVarCSNK2A3
ClinVarCSNK2A3
1000_GenomesCSNK2A3 
Exome Variant ServerCSNK2A3
ExAC (Exome Aggregation Consortium)CSNK2A3 (select the gene name)
Genetic variants : HAPMAP283106
Genomic Variants (DGV)CSNK2A3 [DGVbeta]
DECIPHERCSNK2A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSNK2A3 
Mutations
ICGC Data PortalCSNK2A3 
TCGA Data PortalCSNK2A3 
Broad Tumor PortalCSNK2A3
OASIS PortalCSNK2A3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCSNK2A3
BioMutasearch CSNK2A3
DgiDB (Drug Gene Interaction Database)CSNK2A3
DoCM (Curated mutations)CSNK2A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSNK2A3 (select a term)
intoGenCSNK2A3
Cancer3DCSNK2A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSNK2A3
Genetic Testing Registry CSNK2A3
NextProtQ8NEV1 [Medical]
TSGene283106
GENETestsCSNK2A3
Target ValidationCSNK2A3
Huge Navigator CSNK2A3 [HugePedia]
snp3D : Map Gene to Disease283106
BioCentury BCIQCSNK2A3
ClinGenCSNK2A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283106
Chemical/Pharm GKB GenePA26958
Clinical trialCSNK2A3
Miscellaneous
canSAR (ICR)CSNK2A3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSNK2A3
EVEXCSNK2A3
GoPubMedCSNK2A3
iHOPCSNK2A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.