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CSPG4P1Y (chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked)

Identity

Alias_namesCSPG4LYP1
CSPG4P1
chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 1
chondroitin sulfate proteoglycan 4 pseudogene 1
Other aliasCSPG4LY
CSPG4PY1
HGNC (Hugo) CSPG4P1Y
LocusID (NCBI) 114758
Atlas_Id 62134
Location Yq11.23  [Link to chromosome band Yq11]
Location_base_pair Starts at 24183434 and ends at 24187231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSPG4P1Y   16478
Cards
Entrez_Gene (NCBI)CSPG4P1Y  114758  chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked
AliasesCSPG4LY; CSPG4LYP1; CSPG4P1; CSPG4PY1
GeneCards (Weizmann)CSPG4P1Y
Ensembl hg19 (Hinxton)ENSG00000240450 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240450 [Gene_View]  chrY:24183434-24187231 [Contig_View]  CSPG4P1Y [Vega]
ICGC DataPortalENSG00000240450
TCGA cBioPortalCSPG4P1Y
AceView (NCBI)CSPG4P1Y
Genatlas (Paris)CSPG4P1Y
WikiGenes114758
SOURCE (Princeton)CSPG4P1Y
Genetics Home Reference (NIH)CSPG4P1Y
Genomic and cartography
GoldenPath hg38 (UCSC)CSPG4P1Y  -     chrY:24183434-24187231 -  Yq11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSPG4P1Y  -     Yq11.23   [Description]    (hg19-Feb_2009)
EnsemblCSPG4P1Y - Yq11.23 [CytoView hg19]  CSPG4P1Y - Yq11.23 [CytoView hg38]
Mapping of homologs : NCBICSPG4P1Y [Mapview hg19]  CSPG4P1Y [Mapview hg38]
OMIM400034   
Gene and transcription
Genbank (Entrez)AF332228
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSPG4P1Y
Cluster EST : UnigeneHs.514045 [ NCBI ]
CGAP (NCI)Hs.514045
Alternative Splicing GalleryENSG00000240450
Gene ExpressionCSPG4P1Y [ NCBI-GEO ]   CSPG4P1Y [ EBI - ARRAY_EXPRESS ]   CSPG4P1Y [ SEEK ]   CSPG4P1Y [ MEM ]
Gene Expression Viewer (FireBrowse)CSPG4P1Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)114758
GTEX Portal (Tissue expression)CSPG4P1Y
Human Protein AtlasENSG00000240450-CSPG4P1Y [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSPG4P1Y
DMDM Disease mutations114758
Blocks (Seattle)CSPG4P1Y
Human Protein Atlas [tissue]ENSG00000240450-CSPG4P1Y [tissue]
IPIIPI00045425   
Protein Interaction databases
FunCoupENSG00000240450
BioGRIDCSPG4P1Y
STRING (EMBL)CSPG4P1Y
ZODIACCSPG4P1Y
Ontologies - Pathways
Huge Navigator CSPG4P1Y [HugePedia]
snp3D : Map Gene to Disease114758
BioCentury BCIQCSPG4P1Y
ClinGenCSPG4P1Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114758
Chemical/Pharm GKB GenePA26964
Clinical trialCSPG4P1Y
Miscellaneous
canSAR (ICR)CSPG4P1Y (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSPG4P1Y
EVEXCSPG4P1Y
GoPubMedCSPG4P1Y
iHOPCSPG4P1Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:02 CET 2017

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