Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CSPG4P5 (chondroitin sulfate proteoglycan 4 pseudogene 5)

Identity

Other alias-
HGNC (Hugo) CSPG4P5
LocusID (NCBI) 114817
Atlas_Id 62135
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 84398316 and ends at 84411701 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CSPG4P5   29403
Cards
Entrez_Gene (NCBI)CSPG4P5  114817  chondroitin sulfate proteoglycan 4 pseudogene 5
Aliases
GeneCards (Weizmann)CSPG4P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr15:84398316-84411701 [Contig_View]  CSPG4P5 [Vega]
TCGA cBioPortalCSPG4P5
AceView (NCBI)CSPG4P5
Genatlas (Paris)CSPG4P5
WikiGenes114817
SOURCE (Princeton)CSPG4P5
Genetics Home Reference (NIH)CSPG4P5
Genomic and cartography
GoldenPath hg38 (UCSC)CSPG4P5  -     chr15:84398316-84411701 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSPG4P5  -     15q25.2   [Description]    (hg19-Feb_2009)
GoldenPathCSPG4P5 - 15q25.2 [CytoView hg19]  CSPG4P5 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBICSPG4P5 [Mapview hg19]  CSPG4P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067507
RefSeq transcript (Entrez)NM_052919
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSPG4P5
Cluster EST : UnigeneHs.513096 [ NCBI ]
CGAP (NCI)Hs.513096
Gene ExpressionCSPG4P5 [ NCBI-GEO ]   CSPG4P5 [ EBI - ARRAY_EXPRESS ]   CSPG4P5 [ SEEK ]   CSPG4P5 [ MEM ]
Gene Expression Viewer (FireBrowse)CSPG4P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)114817
GTEX Portal (Tissue expression)CSPG4P5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSPG4P5
DMDM Disease mutations114817
Blocks (Seattle)CSPG4P5
HPRD17231
IPIIPI00738701   
Protein Interaction databases
BioGRIDCSPG4P5
STRING (EMBL)CSPG4P5
ZODIACCSPG4P5
Ontologies - Pathways
Huge Navigator CSPG4P5 [HugePedia]
snp3D : Map Gene to Disease114817
BioCentury BCIQCSPG4P5
ClinGenCSPG4P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114817
Clinical trialCSPG4P5
Miscellaneous
canSAR (ICR)CSPG4P5 (select the gene name)
DataMed IndexCSPG4P5
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSPG4P5
EVEXCSPG4P5
GoPubMedCSPG4P5
iHOPCSPG4P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:24:45 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.