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CSPG4P5 (chondroitin sulfate proteoglycan 4 pseudogene 5)

Identity

Other alias-
HGNC (Hugo) CSPG4P5
LocusID (NCBI) 114817
Atlas_Id 62135
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 84398316 and ends at 84411701 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CSPG4P5   29403
Cards
Entrez_Gene (NCBI)CSPG4P5  114817  chondroitin sulfate proteoglycan 4 pseudogene 5
Aliases
GeneCards (Weizmann)CSPG4P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:84398316-84411701 [Contig_View]  CSPG4P5 [Vega]
TCGA cBioPortalCSPG4P5
AceView (NCBI)CSPG4P5
Genatlas (Paris)CSPG4P5
WikiGenes114817
SOURCE (Princeton)CSPG4P5
Genetics Home Reference (NIH)CSPG4P5
Genomic and cartography
GoldenPath hg38 (UCSC)CSPG4P5  -     chr15:84398316-84411701 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSPG4P5  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblCSPG4P5 - 15q25.2 [CytoView hg19]  CSPG4P5 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBICSPG4P5 [Mapview hg19]  CSPG4P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067507
RefSeq transcript (Entrez)NM_052919
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSPG4P5
Cluster EST : UnigeneHs.513096 [ NCBI ]
CGAP (NCI)Hs.513096
Gene ExpressionCSPG4P5 [ NCBI-GEO ]   CSPG4P5 [ EBI - ARRAY_EXPRESS ]   CSPG4P5 [ SEEK ]   CSPG4P5 [ MEM ]
Gene Expression Viewer (FireBrowse)CSPG4P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114817
GTEX Portal (Tissue expression)CSPG4P5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PW8
Splice isoforms : SwissVarQ96PW8
PhosPhoSitePlusQ96PW8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSPG4P5
DMDM Disease mutations114817
Blocks (Seattle)CSPG4P5
SuperfamilyQ96PW8
Peptide AtlasQ96PW8
HPRD17231
IPIIPI00738701   
Protein Interaction databases
DIP (DOE-UCLA)Q96PW8
IntAct (EBI)Q96PW8
BioGRIDCSPG4P5
STRING (EMBL)CSPG4P5
ZODIACCSPG4P5
Ontologies - Pathways
QuickGOQ96PW8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCSPG4P5
Atlas of Cancer Signalling NetworkCSPG4P5
Wikipedia pathwaysCSPG4P5
Orthology - Evolution
OrthoDB114817
Phylogenetic Trees/Animal Genes : TreeFamCSPG4P5
HOVERGENQ96PW8
HOGENOMQ96PW8
Homologs : HomoloGeneCSPG4P5
Homology/Alignments : Family Browser (UCSC)CSPG4P5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSPG4P5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSPG4P5
dbVarCSPG4P5
ClinVarCSPG4P5
1000_GenomesCSPG4P5 
Exome Variant ServerCSPG4P5
ExAC (Exome Aggregation Consortium)CSPG4P5 (select the gene name)
Genetic variants : HAPMAP114817
Genomic Variants (DGV)CSPG4P5 [DGVbeta]
DECIPHERCSPG4P5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSPG4P5 
Mutations
ICGC Data PortalCSPG4P5 
TCGA Data PortalCSPG4P5 
Broad Tumor PortalCSPG4P5
OASIS PortalCSPG4P5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCSPG4P5
BioMutasearch CSPG4P5
DgiDB (Drug Gene Interaction Database)CSPG4P5
DoCM (Curated mutations)CSPG4P5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSPG4P5 (select a term)
intoGenCSPG4P5
Cancer3DCSPG4P5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSPG4P5
Genetic Testing Registry CSPG4P5
NextProtQ96PW8 [Medical]
TSGene114817
GENETestsCSPG4P5
Target ValidationCSPG4P5
Huge Navigator CSPG4P5 [HugePedia]
snp3D : Map Gene to Disease114817
BioCentury BCIQCSPG4P5
ClinGenCSPG4P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114817
Clinical trialCSPG4P5
Miscellaneous
canSAR (ICR)CSPG4P5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSPG4P5
EVEXCSPG4P5
GoPubMedCSPG4P5
iHOPCSPG4P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:29 CEST 2017

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