Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CSPG5 (chondroitin sulfate proteoglycan 5 (neuroglycan C))

Identity

Alias_nameschondroitin sulfate proteoglycan 5 (neuroglycan C)
Alias_symbol (synonym)NGC
Other alias
HGNC (Hugo) CSPG5
LocusID (NCBI) 10675
Atlas_Id 62136
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 47603728 and ends at 47621730 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CSPG5 (3p21.31) / MAG (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSPG5   2467
Cards
Entrez_Gene (NCBI)CSPG5  10675  chondroitin sulfate proteoglycan 5 (neuroglycan C)
AliasesNGC
GeneCards (Weizmann)CSPG5
Ensembl hg19 (Hinxton)ENSG00000114646 [Gene_View]  chr3:47603728-47621730 [Contig_View]  CSPG5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114646 [Gene_View]  chr3:47603728-47621730 [Contig_View]  CSPG5 [Vega]
ICGC DataPortalENSG00000114646
TCGA cBioPortalCSPG5
AceView (NCBI)CSPG5
Genatlas (Paris)CSPG5
WikiGenes10675
SOURCE (Princeton)CSPG5
Genetics Home Reference (NIH)CSPG5
Genomic and cartography
GoldenPath hg19 (UCSC)CSPG5  -     chr3:47603728-47621730 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSPG5  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblCSPG5 - 3p21.31 [CytoView hg19]  CSPG5 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBICSPG5 [Mapview hg19]  CSPG5 [Mapview hg38]
OMIM606775   
Gene and transcription
Genbank (Entrez)AF059274 AF461087 AF461088 AF461089 AI368601
RefSeq transcript (Entrez)NM_001206942 NM_001206943 NM_001206944 NM_001206945 NM_006574
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_029493 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)CSPG5
Cluster EST : UnigeneHs.45127 [ NCBI ]
CGAP (NCI)Hs.45127
Alternative Splicing GalleryENSG00000114646
Gene ExpressionCSPG5 [ NCBI-GEO ]   CSPG5 [ EBI - ARRAY_EXPRESS ]   CSPG5 [ SEEK ]   CSPG5 [ MEM ]
Gene Expression Viewer (FireBrowse)CSPG5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10675
GTEX Portal (Tissue expression)CSPG5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95196   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95196  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95196
Splice isoforms : SwissVarO95196
PhosPhoSitePlusO95196
Domains : Interpro (EBI)Chon_Sulph_att    EG-like_dom    Neural_ProG_Cyt   
Domain families : Pfam (Sanger)Chon_Sulph_att (PF06566)    Neural_ProG_Cyt (PF06567)   
Domain families : Pfam (NCBI)pfam06566    pfam06567   
Domain families : Smart (EMBL)EGF (SM00181)  
Conserved Domain (NCBI)CSPG5
DMDM Disease mutations10675
Blocks (Seattle)CSPG5
SuperfamilyO95196
Human Protein AtlasENSG00000114646
Peptide AtlasO95196
IPIIPI00008586   IPI00651663   IPI00651705   IPI01018935   IPI01018992   
Protein Interaction databases
DIP (DOE-UCLA)O95196
IntAct (EBI)O95196
FunCoupENSG00000114646
BioGRIDCSPG5
STRING (EMBL)CSPG5
ZODIACCSPG5
Ontologies - Pathways
QuickGOO95196
Ontology : AmiGOpositive regulation of defense response to virus by host  protein binding  extracellular region  endoplasmic reticulum membrane  Golgi apparatus  Golgi lumen  integral component of plasma membrane  carbohydrate metabolic process  nervous system development  growth factor activity  membrane  integral component of membrane  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate catabolic process  dermatan sulfate biosynthetic process  Golgi-associated vesicle membrane  axon regeneration  regulation of growth  lysosomal lumen  small molecule metabolic process  intracellular transport  regulation of synaptic transmission  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  protein binding  extracellular region  endoplasmic reticulum membrane  Golgi apparatus  Golgi lumen  integral component of plasma membrane  carbohydrate metabolic process  nervous system development  growth factor activity  membrane  integral component of membrane  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate catabolic process  dermatan sulfate biosynthetic process  Golgi-associated vesicle membrane  axon regeneration  regulation of growth  lysosomal lumen  small molecule metabolic process  intracellular transport  regulation of synaptic transmission  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkCSPG5
Atlas of Cancer Signalling NetworkCSPG5
Wikipedia pathwaysCSPG5
Orthology - Evolution
OrthoDB10675
GeneTree (enSembl)ENSG00000114646
Phylogenetic Trees/Animal Genes : TreeFamCSPG5
HOVERGENO95196
HOGENOMO95196
Homologs : HomoloGeneCSPG5
Homology/Alignments : Family Browser (UCSC)CSPG5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSPG5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSPG5
dbVarCSPG5
ClinVarCSPG5
1000_GenomesCSPG5 
Exome Variant ServerCSPG5
ExAC (Exome Aggregation Consortium)CSPG5 (select the gene name)
Genetic variants : HAPMAP10675
Genomic Variants (DGV)CSPG5 [DGVbeta]
DECIPHER (Syndromes)3:47603728-47621730  ENSG00000114646
CONAN: Copy Number AnalysisCSPG5 
Mutations
ICGC Data PortalCSPG5 
TCGA Data PortalCSPG5 
Broad Tumor PortalCSPG5
OASIS PortalCSPG5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSPG5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSPG5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSPG5
DgiDB (Drug Gene Interaction Database)CSPG5
DoCM (Curated mutations)CSPG5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSPG5 (select a term)
intoGenCSPG5
Cancer3DCSPG5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606775   
Orphanet
MedgenCSPG5
Genetic Testing Registry CSPG5
NextProtO95196 [Medical]
TSGene10675
GENETestsCSPG5
Huge Navigator CSPG5 [HugePedia]
snp3D : Map Gene to Disease10675
BioCentury BCIQCSPG5
ClinGenCSPG5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10675
Chemical/Pharm GKB GenePA26965
Clinical trialCSPG5
Miscellaneous
canSAR (ICR)CSPG5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSPG5
EVEXCSPG5
GoPubMedCSPG5
iHOPCSPG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:30 CET 2017

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