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CSPP1 (centrosome and spindle pole associated protein 1)

Identity

Alias_symbol (synonym)FLJ22490
CSPP
JBTS21
Other alias
HGNC (Hugo) CSPP1
LocusID (NCBI) 79848
Atlas_Id 55031
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 67083848 and ends at 67196614 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSPP1 (8q13.1) / CSPP1 (8q13.1)CSPP1 (8q13.1) / MAN1A2 (1p12)CSPP1 (8q13.1) / PPP1R42 (8q13.1)
CSPP1 8q13.1 LRRC67CSPP1 8q13.1 / MAN1A2 1p12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSPP1   26193
Cards
Entrez_Gene (NCBI)CSPP1  79848  centrosome and spindle pole associated protein 1
AliasesCSPP; JBTS21
GeneCards (Weizmann)CSPP1
Ensembl hg19 (Hinxton)ENSG00000104218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104218 [Gene_View]  chr8:67083848-67196614 [Contig_View]  CSPP1 [Vega]
ICGC DataPortalENSG00000104218
TCGA cBioPortalCSPP1
AceView (NCBI)CSPP1
Genatlas (Paris)CSPP1
WikiGenes79848
SOURCE (Princeton)CSPP1
Genetics Home Reference (NIH)CSPP1
Genomic and cartography
GoldenPath hg38 (UCSC)CSPP1  -     chr8:67083848-67196614 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSPP1  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblCSPP1 - 8q13.1 [CytoView hg19]  CSPP1 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBICSPP1 [Mapview hg19]  CSPP1 [Mapview hg38]
OMIM611654   615636   
Gene and transcription
Genbank (Entrez)AJ583433 AK026143 AK096205 AK127108 AK308372
RefSeq transcript (Entrez)NM_001077204 NM_001291339 NM_024790
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSPP1
Cluster EST : UnigeneHs.370147 [ NCBI ]
CGAP (NCI)Hs.370147
Alternative Splicing GalleryENSG00000104218
Gene ExpressionCSPP1 [ NCBI-GEO ]   CSPP1 [ EBI - ARRAY_EXPRESS ]   CSPP1 [ SEEK ]   CSPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSPP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79848
GTEX Portal (Tissue expression)CSPP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1MSJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1MSJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1MSJ5
Splice isoforms : SwissVarQ1MSJ5
PhosPhoSitePlusQ1MSJ5
Domains : Interpro (EBI)CSPP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSPP1
DMDM Disease mutations79848
Blocks (Seattle)CSPP1
SuperfamilyQ1MSJ5
Human Protein AtlasENSG00000104218
Peptide AtlasQ1MSJ5
HPRD07991
IPIIPI00424603   IPI00853635   IPI00444793   IPI01024986   IPI00983870   IPI00973777   
Protein Interaction databases
DIP (DOE-UCLA)Q1MSJ5
IntAct (EBI)Q1MSJ5
FunCoupENSG00000104218
BioGRIDCSPP1
STRING (EMBL)CSPP1
ZODIACCSPP1
Ontologies - Pathways
QuickGOQ1MSJ5
Ontology : AmiGOspindle pole  cytoplasm  centrosome  spindle  microtubule  positive regulation of cytokinesis  positive regulation of cell division  
Ontology : EGO-EBIspindle pole  cytoplasm  centrosome  spindle  microtubule  positive regulation of cytokinesis  positive regulation of cell division  
NDEx NetworkCSPP1
Atlas of Cancer Signalling NetworkCSPP1
Wikipedia pathwaysCSPP1
Orthology - Evolution
OrthoDB79848
GeneTree (enSembl)ENSG00000104218
Phylogenetic Trees/Animal Genes : TreeFamCSPP1
HOVERGENQ1MSJ5
HOGENOMQ1MSJ5
Homologs : HomoloGeneCSPP1
Homology/Alignments : Family Browser (UCSC)CSPP1
Gene fusions - Rearrangements
Fusion : MitelmanCSPP1/MAN1A2 [8q13.1/1p12]  
Fusion : MitelmanCSPP1/PPP1R42 [8q13.1/8q13.1]  [t(8;8)(q13;q13)]  
Fusion: TCGACSPP1 8q13.1 LRRC67 BLCA
Fusion: TCGACSPP1 8q13.1 MAN1A2 1p12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSPP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSPP1
dbVarCSPP1
ClinVarCSPP1
1000_GenomesCSPP1 
Exome Variant ServerCSPP1
ExAC (Exome Aggregation Consortium)CSPP1 (select the gene name)
Genetic variants : HAPMAP79848
Genomic Variants (DGV)CSPP1 [DGVbeta]
DECIPHERCSPP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSPP1 
Mutations
ICGC Data PortalCSPP1 
TCGA Data PortalCSPP1 
Broad Tumor PortalCSPP1
OASIS PortalCSPP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSPP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSPP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSPP1
DgiDB (Drug Gene Interaction Database)CSPP1
DoCM (Curated mutations)CSPP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSPP1 (select a term)
intoGenCSPP1
Cancer3DCSPP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611654    615636   
Orphanet280    1022    22695   
MedgenCSPP1
Genetic Testing Registry CSPP1
NextProtQ1MSJ5 [Medical]
TSGene79848
GENETestsCSPP1
Target ValidationCSPP1
Huge Navigator CSPP1 [HugePedia]
snp3D : Map Gene to Disease79848
BioCentury BCIQCSPP1
ClinGenCSPP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79848
Chemical/Pharm GKB GenePA142672066
Clinical trialCSPP1
Miscellaneous
canSAR (ICR)CSPP1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSPP1
EVEXCSPP1
GoPubMedCSPP1
iHOPCSPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:58:45 CEST 2017

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