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CSRNP1 (cysteine and serine rich nuclear protein 1)

Identity

Alias_namesAXUD1
AXIN1 up-regulated 1
cysteine-serine-rich nuclear protein 1
Alias_symbol (synonym)URAX1
DKFZp566F164
FAM130B
TAIP-3
Other aliasCSRNP-1
HGNC (Hugo) CSRNP1
LocusID (NCBI) 64651
Atlas_Id 734
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 39141851 and ends at 39147430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSRNP1 (3p22.2) / CSRNP1 (3p22.2)CSRNP1 (3p22.2) / ZNF506 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSRNP1   14300
Cards
Entrez_Gene (NCBI)CSRNP1  64651  cysteine and serine rich nuclear protein 1
AliasesAXUD1; CSRNP-1; FAM130B; TAIP-3; 
URAX1
GeneCards (Weizmann)CSRNP1
Ensembl hg19 (Hinxton)ENSG00000144655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144655 [Gene_View]  chr3:39141851-39147430 [Contig_View]  CSRNP1 [Vega]
ICGC DataPortalENSG00000144655
TCGA cBioPortalCSRNP1
AceView (NCBI)CSRNP1
Genatlas (Paris)CSRNP1
WikiGenes64651
SOURCE (Princeton)CSRNP1
Genetics Home Reference (NIH)CSRNP1
Genomic and cartography
GoldenPath hg38 (UCSC)CSRNP1  -     chr3:39141851-39147430 -  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSRNP1  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblCSRNP1 - 3p22.2 [CytoView hg19]  CSRNP1 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBICSRNP1 [Mapview hg19]  CSRNP1 [Mapview hg38]
OMIM606458   
Gene and transcription
Genbank (Entrez)AB053121 AB063301 AL117565 BC028213 BC038949
RefSeq transcript (Entrez)NM_001320559 NM_001320560 NM_033027
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSRNP1
Cluster EST : UnigeneHs.370950 [ NCBI ]
CGAP (NCI)Hs.370950
Alternative Splicing GalleryENSG00000144655
Gene ExpressionCSRNP1 [ NCBI-GEO ]   CSRNP1 [ EBI - ARRAY_EXPRESS ]   CSRNP1 [ SEEK ]   CSRNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSRNP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64651
GTEX Portal (Tissue expression)CSRNP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S65
Splice isoforms : SwissVarQ96S65
PhosPhoSitePlusQ96S65
Domains : Interpro (EBI)CSRNP_N    Cys/Ser-rich_nuc_prot   
Domain families : Pfam (Sanger)CSRNP_N (PF16019)   
Domain families : Pfam (NCBI)pfam16019   
Conserved Domain (NCBI)CSRNP1
DMDM Disease mutations64651
Blocks (Seattle)CSRNP1
SuperfamilyQ96S65
Human Protein AtlasENSG00000144655
Peptide AtlasQ96S65
HPRD07347
IPIIPI00045508   IPI00181445   
Protein Interaction databases
DIP (DOE-UCLA)Q96S65
IntAct (EBI)Q96S65
FunCoupENSG00000144655
BioGRIDCSRNP1
STRING (EMBL)CSRNP1
ZODIACCSRNP1
Ontologies - Pathways
QuickGOQ96S65
Ontology : AmiGOmolecular_function  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  apoptotic process  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBImolecular_function  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  apoptotic process  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCSRNP1
Atlas of Cancer Signalling NetworkCSRNP1
Wikipedia pathwaysCSRNP1
Orthology - Evolution
OrthoDB64651
GeneTree (enSembl)ENSG00000144655
Phylogenetic Trees/Animal Genes : TreeFamCSRNP1
HOVERGENQ96S65
HOGENOMQ96S65
Homologs : HomoloGeneCSRNP1
Homology/Alignments : Family Browser (UCSC)CSRNP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSRNP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSRNP1
dbVarCSRNP1
ClinVarCSRNP1
1000_GenomesCSRNP1 
Exome Variant ServerCSRNP1
ExAC (Exome Aggregation Consortium)CSRNP1 (select the gene name)
Genetic variants : HAPMAP64651
Genomic Variants (DGV)CSRNP1 [DGVbeta]
DECIPHERCSRNP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSRNP1 
Mutations
ICGC Data PortalCSRNP1 
TCGA Data PortalCSRNP1 
Broad Tumor PortalCSRNP1
OASIS PortalCSRNP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSRNP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSRNP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSRNP1
DgiDB (Drug Gene Interaction Database)CSRNP1
DoCM (Curated mutations)CSRNP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSRNP1 (select a term)
intoGenCSRNP1
Cancer3DCSRNP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606458   
Orphanet
MedgenCSRNP1
Genetic Testing Registry CSRNP1
NextProtQ96S65 [Medical]
TSGene64651
GENETestsCSRNP1
Target ValidationCSRNP1
Huge Navigator CSRNP1 [HugePedia]
snp3D : Map Gene to Disease64651
BioCentury BCIQCSRNP1
ClinGenCSRNP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64651
Chemical/Pharm GKB GenePA25200
Clinical trialCSRNP1
Miscellaneous
canSAR (ICR)CSRNP1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSRNP1
EVEXCSRNP1
GoPubMedCSRNP1
iHOPCSRNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:58:45 CEST 2017

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