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CSRNP2 (cysteine and serine rich nuclear protein 2)

Identity

Alias_namesC12orf22
FAM130A1
chromosome 12 open reading frame 22
family with sequence similarity 130, member A1
cysteine-serine-rich nuclear protein 2
Alias_symbol (synonym)C12ORF2
TAIP-12
PPP1R72
Other aliasC12orf2
HGNC (Hugo) CSRNP2
LocusID (NCBI) 81566
Atlas_Id 62138
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 51061205 and ends at 51083671 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSRNP2 (12q13.12) / ATP1B1 (1q24.2)CSRNP2 (12q13.12) / CSRNP2 (12q13.12)CSRNP2 (12q13.12) / FBLN1 (22q13.31)
EXOC4 (7q33) / CSRNP2 (12q13.12)FBLN1 (22q13.31) / CSRNP2 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSRNP2   16006
Cards
Entrez_Gene (NCBI)CSRNP2  81566  cysteine and serine rich nuclear protein 2
AliasesC12orf2; C12orf22; FAM130A1; PPP1R72; 
TAIP-12
GeneCards (Weizmann)CSRNP2
Ensembl hg19 (Hinxton)ENSG00000110925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110925 [Gene_View]  chr12:51061205-51083671 [Contig_View]  CSRNP2 [Vega]
ICGC DataPortalENSG00000110925
TCGA cBioPortalCSRNP2
AceView (NCBI)CSRNP2
Genatlas (Paris)CSRNP2
WikiGenes81566
SOURCE (Princeton)CSRNP2
Genetics Home Reference (NIH)CSRNP2
Genomic and cartography
GoldenPath hg38 (UCSC)CSRNP2  -     chr12:51061205-51083671 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSRNP2  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblCSRNP2 - 12q13.12 [CytoView hg19]  CSRNP2 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBICSRNP2 [Mapview hg19]  CSRNP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB063302 AF052105 AJ298133 AK098442 AK313080
RefSeq transcript (Entrez)NM_030809
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSRNP2
Cluster EST : UnigeneHs.524425 [ NCBI ]
CGAP (NCI)Hs.524425
Alternative Splicing GalleryENSG00000110925
Gene ExpressionCSRNP2 [ NCBI-GEO ]   CSRNP2 [ EBI - ARRAY_EXPRESS ]   CSRNP2 [ SEEK ]   CSRNP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CSRNP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81566
GTEX Portal (Tissue expression)CSRNP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H175   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H175  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H175
Splice isoforms : SwissVarQ9H175
PhosPhoSitePlusQ9H175
Domains : Interpro (EBI)CSRNP_N    Cys/Ser-rich_nuc_prot   
Domain families : Pfam (Sanger)CSRNP_N (PF16019)   
Domain families : Pfam (NCBI)pfam16019   
Conserved Domain (NCBI)CSRNP2
DMDM Disease mutations81566
Blocks (Seattle)CSRNP2
SuperfamilyQ9H175
Human Protein AtlasENSG00000110925
Peptide AtlasQ9H175
HPRD12608
IPIIPI00006603   IPI01021950   IPI01020680   IPI01022964   IPI01022814   
Protein Interaction databases
DIP (DOE-UCLA)Q9H175
IntAct (EBI)Q9H175
FunCoupENSG00000110925
BioGRIDCSRNP2
STRING (EMBL)CSRNP2
ZODIACCSRNP2
Ontologies - Pathways
QuickGOQ9H175
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  transcription from RNA polymerase II promoter  apoptotic process  negative regulation of phosphatase activity  phosphatase binding  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  transcription from RNA polymerase II promoter  apoptotic process  negative regulation of phosphatase activity  phosphatase binding  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCSRNP2
Atlas of Cancer Signalling NetworkCSRNP2
Wikipedia pathwaysCSRNP2
Orthology - Evolution
OrthoDB81566
GeneTree (enSembl)ENSG00000110925
Phylogenetic Trees/Animal Genes : TreeFamCSRNP2
HOVERGENQ9H175
HOGENOMQ9H175
Homologs : HomoloGeneCSRNP2
Homology/Alignments : Family Browser (UCSC)CSRNP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSRNP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSRNP2
dbVarCSRNP2
ClinVarCSRNP2
1000_GenomesCSRNP2 
Exome Variant ServerCSRNP2
ExAC (Exome Aggregation Consortium)CSRNP2 (select the gene name)
Genetic variants : HAPMAP81566
Genomic Variants (DGV)CSRNP2 [DGVbeta]
DECIPHERCSRNP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSRNP2 
Mutations
ICGC Data PortalCSRNP2 
TCGA Data PortalCSRNP2 
Broad Tumor PortalCSRNP2
OASIS PortalCSRNP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSRNP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSRNP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSRNP2
DgiDB (Drug Gene Interaction Database)CSRNP2
DoCM (Curated mutations)CSRNP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSRNP2 (select a term)
intoGenCSRNP2
Cancer3DCSRNP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSRNP2
Genetic Testing Registry CSRNP2
NextProtQ9H175 [Medical]
TSGene81566
GENETestsCSRNP2
Target ValidationCSRNP2
Huge Navigator CSRNP2 [HugePedia]
snp3D : Map Gene to Disease81566
BioCentury BCIQCSRNP2
ClinGenCSRNP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81566
Chemical/Pharm GKB GenePA25503
Clinical trialCSRNP2
Miscellaneous
canSAR (ICR)CSRNP2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSRNP2
EVEXCSRNP2
GoPubMedCSRNP2
iHOPCSRNP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:29 CEST 2017

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