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CSRNP2 (cysteine and serine rich nuclear protein 2)

Identity

Alias (NCBI)C12orf2
C12orf22
FAM130A1
PPP1R72
TAIP-12
HGNC (Hugo) CSRNP2
HGNC Alias symbC12ORF2
TAIP-12
PPP1R72
HGNC Alias nameprotein phosphatase 1, regulatory subunit 72
HGNC Previous nameC12orf22
 FAM130A1
HGNC Previous namechromosome 12 open reading frame 22
 family with sequence similarity 130, member A1
 cysteine-serine-rich nuclear protein 2
LocusID (NCBI) 81566
Atlas_Id 62138
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 51061205 and ends at 51083596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSRNP2 (12q13.12) / ATP1B1 (1q24.2)CSRNP2 (12q13.12) / CSRNP2 (12q13.12)CSRNP2 (12q13.12) / FBLN1 (22q13.31)
EXOC4 (7q33) / CSRNP2 (12q13.12)FBLN1 (22q13.31) / CSRNP2 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CSRNP2   16006
Cards
Entrez_Gene (NCBI)CSRNP2    cysteine and serine rich nuclear protein 2
AliasesC12orf2; C12orf22; FAM130A1; PPP1R72; 
TAIP-12
GeneCards (Weizmann)CSRNP2
Ensembl hg19 (Hinxton)ENSG00000110925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110925 [Gene_View]  ENSG00000110925 [Sequence]  chr12:51061205-51083596 [Contig_View]  CSRNP2 [Vega]
ICGC DataPortalENSG00000110925
TCGA cBioPortalCSRNP2
AceView (NCBI)CSRNP2
Genatlas (Paris)CSRNP2
SOURCE (Princeton)CSRNP2
Genetics Home Reference (NIH)CSRNP2
Genomic and cartography
GoldenPath hg38 (UCSC)CSRNP2  -     chr12:51061205-51083596 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSRNP2  -     12q13.12   [Description]    (hg19-Feb_2009)
GoldenPathCSRNP2 - 12q13.12 [CytoView hg19]  CSRNP2 - 12q13.12 [CytoView hg38]
ImmunoBaseENSG00000110925
Genome Data Viewer NCBICSRNP2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB063302 AF052105 AJ298133 AK098442 AK313080
RefSeq transcript (Entrez)NM_030809
Consensus coding sequences : CCDS (NCBI)CSRNP2
Gene ExpressionCSRNP2 [ NCBI-GEO ]   CSRNP2 [ EBI - ARRAY_EXPRESS ]   CSRNP2 [ SEEK ]   CSRNP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CSRNP2 [ Firebrowse - Broad ]
GenevisibleExpression of CSRNP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81566
GTEX Portal (Tissue expression)CSRNP2
Human Protein AtlasENSG00000110925-CSRNP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H175   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H175  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H175
PhosPhoSitePlusQ9H175
Domains : Interpro (EBI)CSRNP_N    Cys/Ser-rich_nuc_prot   
Domain families : Pfam (Sanger)CSRNP_N (PF16019)   
Domain families : Pfam (NCBI)pfam16019   
Conserved Domain (NCBI)CSRNP2
SuperfamilyQ9H175
AlphaFold pdb e-kbQ9H175   
Human Protein Atlas [tissue]ENSG00000110925-CSRNP2 [tissue]
HPRD12608
Protein Interaction databases
DIP (DOE-UCLA)Q9H175
IntAct (EBI)Q9H175
BioGRIDCSRNP2
STRING (EMBL)CSRNP2
ZODIACCSRNP2
Ontologies - Pathways
QuickGOQ9H175
Ontology : AmiGOchromatin  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleus  nucleus  nucleus  regulation of transcription by RNA polymerase II  apoptotic process  phosphatase binding  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIchromatin  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleus  nucleus  nucleus  regulation of transcription by RNA polymerase II  apoptotic process  phosphatase binding  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  
NDEx NetworkCSRNP2
Atlas of Cancer Signalling NetworkCSRNP2
Wikipedia pathwaysCSRNP2
Orthology - Evolution
OrthoDB81566
GeneTree (enSembl)ENSG00000110925
Phylogenetic Trees/Animal Genes : TreeFamCSRNP2
Homologs : HomoloGeneCSRNP2
Homology/Alignments : Family Browser (UCSC)CSRNP2
Gene fusions - Rearrangements
Fusion : QuiverCSRNP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSRNP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSRNP2
dbVarCSRNP2
ClinVarCSRNP2
MonarchCSRNP2
1000_GenomesCSRNP2 
Exome Variant ServerCSRNP2
GNOMAD BrowserENSG00000110925
Varsome BrowserCSRNP2
ACMGCSRNP2 variants
VarityQ9H175
Genomic Variants (DGV)CSRNP2 [DGVbeta]
DECIPHERCSRNP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSRNP2 
Mutations
ICGC Data PortalCSRNP2 
TCGA Data PortalCSRNP2 
Broad Tumor PortalCSRNP2
OASIS PortalCSRNP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSRNP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCSRNP2
Mutations and Diseases : HGMDCSRNP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCSRNP2
DgiDB (Drug Gene Interaction Database)CSRNP2
DoCM (Curated mutations)CSRNP2
CIViC (Clinical Interpretations of Variants in Cancer)CSRNP2
Cancer3DCSRNP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCSRNP2
MedgenCSRNP2
Genetic Testing Registry CSRNP2
NextProtQ9H175 [Medical]
GENETestsCSRNP2
Target ValidationCSRNP2
Huge Navigator CSRNP2 [HugePedia]
ClinGenCSRNP2
Clinical trials, drugs, therapy
MyCancerGenomeCSRNP2
Protein Interactions : CTDCSRNP2
Pharm GKB GenePA25503
PharosQ9H175
Clinical trialCSRNP2
Miscellaneous
canSAR (ICR)CSRNP2
HarmonizomeCSRNP2
DataMed IndexCSRNP2
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCSRNP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:46:58 CEST 2021

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