Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CSRNP3 (cysteine and serine rich nuclear protein 3)

Identity

Alias_namesFAM130A2
family with sequence similarity 130, member A2
cysteine-serine-rich nuclear protein 3
Alias_symbol (synonym)FLJ32093
TAIP-2
PPP1R73
Other aliasTAIP2
HGNC (Hugo) CSRNP3
LocusID (NCBI) 80034
Atlas_Id 62139
Location 2q24.3  [Link to chromosome band 2q24]
Location_base_pair Starts at 165469647 and ends at 165689407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPRC5A (12p13.1) / CSRNP3 (2q24.3)RASL11B (4q12) / CSRNP3 (2q24.3)SORT1 (1p13.3) / CSRNP3 (2q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSRNP3   30729
Cards
Entrez_Gene (NCBI)CSRNP3  80034  cysteine and serine rich nuclear protein 3
AliasesFAM130A2; PPP1R73; TAIP-2; TAIP2
GeneCards (Weizmann)CSRNP3
Ensembl hg19 (Hinxton)ENSG00000178662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178662 [Gene_View]  chr2:165469647-165689407 [Contig_View]  CSRNP3 [Vega]
ICGC DataPortalENSG00000178662
TCGA cBioPortalCSRNP3
AceView (NCBI)CSRNP3
Genatlas (Paris)CSRNP3
WikiGenes80034
SOURCE (Princeton)CSRNP3
Genetics Home Reference (NIH)CSRNP3
Genomic and cartography
GoldenPath hg38 (UCSC)CSRNP3  -     chr2:165469647-165689407 +  2q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSRNP3  -     2q24.3   [Description]    (hg19-Feb_2009)
EnsemblCSRNP3 - 2q24.3 [CytoView hg19]  CSRNP3 - 2q24.3 [CytoView hg38]
Mapping of homologs : NCBICSRNP3 [Mapview hg19]  CSRNP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB063300 AK021765 AK055302 AK056655 AK096497
RefSeq transcript (Entrez)NM_001172173 NM_024969
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSRNP3
Cluster EST : UnigeneHs.470479 [ NCBI ]
CGAP (NCI)Hs.470479
Alternative Splicing GalleryENSG00000178662
Gene ExpressionCSRNP3 [ NCBI-GEO ]   CSRNP3 [ EBI - ARRAY_EXPRESS ]   CSRNP3 [ SEEK ]   CSRNP3 [ MEM ]
Gene Expression Viewer (FireBrowse)CSRNP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80034
GTEX Portal (Tissue expression)CSRNP3
Human Protein AtlasENSG00000178662-CSRNP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYN3
Splice isoforms : SwissVarQ8WYN3
PhosPhoSitePlusQ8WYN3
Domains : Interpro (EBI)CSRNP_N    Cys/Ser-rich_nuc_prot   
Domain families : Pfam (Sanger)CSRNP_N (PF16019)   
Domain families : Pfam (NCBI)pfam16019   
Conserved Domain (NCBI)CSRNP3
DMDM Disease mutations80034
Blocks (Seattle)CSRNP3
SuperfamilyQ8WYN3
Human Protein Atlas [tissue]ENSG00000178662-CSRNP3 [tissue]
Peptide AtlasQ8WYN3
HPRD18144
IPIIPI00163680   IPI00445389   IPI00979408   IPI00917020   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYN3
IntAct (EBI)Q8WYN3
FunCoupENSG00000178662
BioGRIDCSRNP3
STRING (EMBL)CSRNP3
ZODIACCSRNP3
Ontologies - Pathways
QuickGOQ8WYN3
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription from RNA polymerase II promoter  apoptotic process  negative regulation of phosphatase activity  positive regulation of apoptotic process  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription from RNA polymerase II promoter  apoptotic process  negative regulation of phosphatase activity  positive regulation of apoptotic process  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCSRNP3
Atlas of Cancer Signalling NetworkCSRNP3
Wikipedia pathwaysCSRNP3
Orthology - Evolution
OrthoDB80034
GeneTree (enSembl)ENSG00000178662
Phylogenetic Trees/Animal Genes : TreeFamCSRNP3
HOVERGENQ8WYN3
HOGENOMQ8WYN3
Homologs : HomoloGeneCSRNP3
Homology/Alignments : Family Browser (UCSC)CSRNP3
Gene fusions - Rearrangements
Tumor Fusion PortalCSRNP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSRNP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSRNP3
dbVarCSRNP3
ClinVarCSRNP3
1000_GenomesCSRNP3 
Exome Variant ServerCSRNP3
ExAC (Exome Aggregation Consortium)ENSG00000178662
GNOMAD BrowserENSG00000178662
Genetic variants : HAPMAP80034
Genomic Variants (DGV)CSRNP3 [DGVbeta]
DECIPHERCSRNP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSRNP3 
Mutations
ICGC Data PortalCSRNP3 
TCGA Data PortalCSRNP3 
Broad Tumor PortalCSRNP3
OASIS PortalCSRNP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSRNP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSRNP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSRNP3
DgiDB (Drug Gene Interaction Database)CSRNP3
DoCM (Curated mutations)CSRNP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSRNP3 (select a term)
intoGenCSRNP3
Cancer3DCSRNP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCSRNP3
MedgenCSRNP3
Genetic Testing Registry CSRNP3
NextProtQ8WYN3 [Medical]
TSGene80034
GENETestsCSRNP3
Target ValidationCSRNP3
Huge Navigator CSRNP3 [HugePedia]
snp3D : Map Gene to Disease80034
BioCentury BCIQCSRNP3
ClinGenCSRNP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80034
Chemical/Pharm GKB GenePA164718184
Clinical trialCSRNP3
Miscellaneous
canSAR (ICR)CSRNP3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSRNP3
EVEXCSRNP3
GoPubMedCSRNP3
iHOPCSRNP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:04:18 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.