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CSRP2 (cysteine and glycine rich protein 2)

Identity

Alias_symbol (synonym)SmLIM
CRP2
LMO5
Other alias
HGNC (Hugo) CSRP2
LocusID (NCBI) 1466
Atlas_Id 40176
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 76858715 and ends at 76879040 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSRP2   2470
Cards
Entrez_Gene (NCBI)CSRP2  1466  cysteine and glycine rich protein 2
AliasesCRP2; LMO5; SmLIM
GeneCards (Weizmann)CSRP2
Ensembl hg19 (Hinxton)ENSG00000175183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175183 [Gene_View]  chr12:76858715-76879040 [Contig_View]  CSRP2 [Vega]
ICGC DataPortalENSG00000175183
TCGA cBioPortalCSRP2
AceView (NCBI)CSRP2
Genatlas (Paris)CSRP2
WikiGenes1466
SOURCE (Princeton)CSRP2
Genetics Home Reference (NIH)CSRP2
Genomic and cartography
GoldenPath hg38 (UCSC)CSRP2  -     chr12:76858715-76879040 -  12q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSRP2  -     12q21.2   [Description]    (hg19-Feb_2009)
EnsemblCSRP2 - 12q21.2 [CytoView hg19]  CSRP2 - 12q21.2 [CytoView hg38]
Mapping of homologs : NCBICSRP2 [Mapview hg19]  CSRP2 [Mapview hg38]
OMIM601871   
Gene and transcription
Genbank (Entrez)AB209321 AY349166 BC000992 BT019913 BX461295
RefSeq transcript (Entrez)NM_001300965 NM_001321
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSRP2
Cluster EST : UnigeneHs.530904 [ NCBI ]
CGAP (NCI)Hs.530904
Alternative Splicing GalleryENSG00000175183
Gene ExpressionCSRP2 [ NCBI-GEO ]   CSRP2 [ EBI - ARRAY_EXPRESS ]   CSRP2 [ SEEK ]   CSRP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CSRP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1466
GTEX Portal (Tissue expression)CSRP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16527   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16527  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16527
Splice isoforms : SwissVarQ16527
PhosPhoSitePlusQ16527
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)CSRP2
DMDM Disease mutations1466
Blocks (Seattle)CSRP2
SuperfamilyQ16527
Human Protein AtlasENSG00000175183
Peptide AtlasQ16527
HPRD03523
IPIIPI00002824   IPI01021304   IPI01021914   
Protein Interaction databases
DIP (DOE-UCLA)Q16527
IntAct (EBI)Q16527
FunCoupENSG00000175183
BioGRIDCSRP2
STRING (EMBL)CSRP2
ZODIACCSRP2
Ontologies - Pathways
QuickGOQ16527
Ontology : AmiGOmolecular_function  protein binding  nucleus  focal adhesion  multicellular organism development  zinc ion binding  cell differentiation  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  focal adhesion  multicellular organism development  zinc ion binding  cell differentiation  
NDEx NetworkCSRP2
Atlas of Cancer Signalling NetworkCSRP2
Wikipedia pathwaysCSRP2
Orthology - Evolution
OrthoDB1466
GeneTree (enSembl)ENSG00000175183
Phylogenetic Trees/Animal Genes : TreeFamCSRP2
HOVERGENQ16527
HOGENOMQ16527
Homologs : HomoloGeneCSRP2
Homology/Alignments : Family Browser (UCSC)CSRP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSRP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSRP2
dbVarCSRP2
ClinVarCSRP2
1000_GenomesCSRP2 
Exome Variant ServerCSRP2
ExAC (Exome Aggregation Consortium)CSRP2 (select the gene name)
Genetic variants : HAPMAP1466
Genomic Variants (DGV)CSRP2 [DGVbeta]
DECIPHERCSRP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSRP2 
Mutations
ICGC Data PortalCSRP2 
TCGA Data PortalCSRP2 
Broad Tumor PortalCSRP2
OASIS PortalCSRP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSRP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSRP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSRP2
DgiDB (Drug Gene Interaction Database)CSRP2
DoCM (Curated mutations)CSRP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSRP2 (select a term)
intoGenCSRP2
Cancer3DCSRP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601871   
Orphanet
MedgenCSRP2
Genetic Testing Registry CSRP2
NextProtQ16527 [Medical]
TSGene1466
GENETestsCSRP2
Huge Navigator CSRP2 [HugePedia]
snp3D : Map Gene to Disease1466
BioCentury BCIQCSRP2
ClinGenCSRP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1466
Chemical/Pharm GKB GenePA26968
Clinical trialCSRP2
Miscellaneous
canSAR (ICR)CSRP2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSRP2
EVEXCSRP2
GoPubMedCSRP2
iHOPCSRP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:12:00 CEST 2017

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