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CSRP3 (cysteine and glycine-rich protein 3 (cardiac LIM protein))

Identity

Other namesCLP
CMD1M
CMH12
CRP3
LMO4
MLP
HGNC (Hugo) CSRP3
LocusID (NCBI) 8048
Location 11p15.1
Location_base_pair Starts at 19203577 and ends at 19232118 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CSRP3   2472
Cards
Entrez_Gene (NCBI)CSRP3  8048  cysteine and glycine-rich protein 3 (cardiac LIM protein)
GeneCards (Weizmann)CSRP3
Ensembl (Hinxton)ENSG00000129170 [Gene_View]  chr11:19203577-19232118 [Contig_View]  CSRP3 [Vega]
AceView (NCBI)CSRP3
Genatlas (Paris)CSRP3
WikiGenes8048
SOURCE (Princeton)NM_003476
Genomic and cartography
GoldenPath (UCSC)CSRP3  -  11p15.1   chr11:19203577-19232118 -  11p15.1   [Description]    (hg19-Feb_2009)
EnsemblCSRP3 - 11p15.1 [CytoView]
Mapping of homologs : NCBICSRP3 [Mapview]
OMIM600824   607482   612124   
Gene and transcription
Genbank (Entrez)AA192614 AF121260 AI184002 AJ711422 AK313289
RefSeq transcript (Entrez)NM_003476
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_011932 NT_009237 NW_001838022 NW_004929378
Consensus coding sequences : CCDS (NCBI)CSRP3
Cluster EST : UnigeneHs.83577 [ NCBI ]
CGAP (NCI)Hs.83577
Alternative Splicing : Fast-db (Paris)GSHG0005641
Alternative Splicing GalleryENSG00000129170
Gene ExpressionCSRP3 [ NCBI-GEO ]     CSRP3 [ SEEK ]   CSRP3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50461 (Uniprot)
NextProtP50461  [Medical]
With graphics : InterProP50461
Splice isoforms : SwissVarP50461 (Swissvar)
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Related proteins : CluSTrP50461
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
DMDM Disease mutations8048
Blocks (Seattle)P50461
PDB (SRS)2O10    2O13   
PDB (PDBSum)2O10    2O13   
PDB (IMB)2O10    2O13   
PDB (RSDB)2O10    2O13   
Human Protein AtlasENSG00000129170
Peptide AtlasP50461
HPRD07525
IPIIPI00032164   
Protein Interaction databases
DIP (DOE-UCLA)P50461
IntAct (EBI)P50461
FunCoupENSG00000129170
BioGRIDCSRP3
InParanoidP50461
Interologous Interaction database P50461
IntegromeDBCSRP3
STRING (EMBL)CSRP3
Ontologies - Pathways
Ontology : AmiGOregulation of the force of heart contraction  cardiac muscle hypertrophy  protein binding  nucleus  cytoskeleton  cellular calcium ion homeostasis  skeletal muscle tissue development  zinc ion binding  structural constituent of muscle  Z disc  telethonin binding  telethonin binding  protein localization to organelle  detection of muscle stretch  actinin binding  cardiac muscle tissue development  cardiac myofibril assembly  cardiac muscle contraction  
Ontology : EGO-EBIregulation of the force of heart contraction  cardiac muscle hypertrophy  protein binding  nucleus  cytoskeleton  cellular calcium ion homeostasis  skeletal muscle tissue development  zinc ion binding  structural constituent of muscle  Z disc  telethonin binding  telethonin binding  protein localization to organelle  detection of muscle stretch  actinin binding  cardiac muscle tissue development  cardiac myofibril assembly  cardiac muscle contraction  
REACTOMECSRP3
Protein Interaction DatabaseCSRP3
Wikipedia pathwaysCSRP3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CSRP3
SNP (GeneSNP Utah)CSRP3
SNP : HGBaseCSRP3
Genetic variants : HAPMAPCSRP3
1000_GenomesCSRP3 
ICGC programENSG00000129170 
Somatic Mutations in Cancer : COSMICCSRP3 
CONAN: Copy Number AnalysisCSRP3 
Mutations and Diseases : HGMDCSRP3
OMIM600824    607482    612124   
GENETestsCSRP3
Disease Genetic AssociationCSRP3
Huge Navigator CSRP3 [HugePedia]  CSRP3 [HugeCancerGEM]
Genomic VariantsCSRP3  CSRP3 [DGVbeta]
Exome VariantCSRP3
dbVarCSRP3
ClinVarCSRP3
snp3D : Map Gene to Disease8048
General knowledge
Homologs : HomoloGeneCSRP3
Homology/Alignments : Family Browser (UCSC)CSRP3
Phylogenetic Trees/Animal Genes : TreeFamCSRP3
Chemical/Protein Interactions : CTD8048
Chemical/Pharm GKB GenePA26971
Clinical trialCSRP3
Cancer Resource (Charite)ENSG00000129170
Other databases
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
CoreMineCSRP3
iHOPCSRP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:53:39 CEST 2014

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