Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CST1 (cystatin SN)

Identity

Other alias-
HGNC (Hugo) CST1
LocusID (NCBI) 1469
Atlas_Id 51081
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23747553 and ends at 23750937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CST1 (20p11.21) / ALDH3B2 (11q13.2)CST1 (20p11.21) / BCLAF1 (6q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CST1   2473
Cards
Entrez_Gene (NCBI)CST1  1469  cystatin SN
Aliases
GeneCards (Weizmann)CST1
Ensembl hg19 (Hinxton)ENSG00000170373 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170373 [Gene_View]  chr20:23747553-23750937 [Contig_View]  CST1 [Vega]
ICGC DataPortalENSG00000170373
TCGA cBioPortalCST1
AceView (NCBI)CST1
Genatlas (Paris)CST1
WikiGenes1469
SOURCE (Princeton)CST1
Genetics Home Reference (NIH)CST1
Genomic and cartography
GoldenPath hg38 (UCSC)CST1  -     chr20:23747553-23750937 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CST1  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCST1 - 20p11.21 [CytoView hg19]  CST1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICST1 [Mapview hg19]  CST1 [Mapview hg38]
OMIM123855   
Gene and transcription
Genbank (Entrez)BC021225 J03870
RefSeq transcript (Entrez)NM_001898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CST1
Cluster EST : UnigeneHs.123114 [ NCBI ]
CGAP (NCI)Hs.123114
Alternative Splicing GalleryENSG00000170373
Gene ExpressionCST1 [ NCBI-GEO ]   CST1 [ EBI - ARRAY_EXPRESS ]   CST1 [ SEEK ]   CST1 [ MEM ]
Gene Expression Viewer (FireBrowse)CST1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1469
GTEX Portal (Tissue expression)CST1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01037   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01037  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01037
Splice isoforms : SwissVarP01037
PhosPhoSitePlusP01037
Domaine pattern : Prosite (Expaxy)CYSTATIN (PS00287)   
Domains : Interpro (EBI)Cystatin    Cystatin_dom    Prot_inh_cystat_CS   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)CST1
DMDM Disease mutations1469
Blocks (Seattle)CST1
SuperfamilyP01037
Human Protein AtlasENSG00000170373
Peptide AtlasP01037
HPRD00460
IPIIPI00305477   
Protein Interaction databases
DIP (DOE-UCLA)P01037
IntAct (EBI)P01037
FunCoupENSG00000170373
BioGRIDCST1
STRING (EMBL)CST1
ZODIACCST1
Ontologies - Pathways
QuickGOP01037
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  cysteine-type endopeptidase inhibitor activity  protein binding  extracellular space  negative regulation of endopeptidase activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  cysteine-type endopeptidase inhibitor activity  protein binding  extracellular space  negative regulation of endopeptidase activity  
Pathways : KEGGSalivary secretion   
NDEx NetworkCST1
Atlas of Cancer Signalling NetworkCST1
Wikipedia pathwaysCST1
Orthology - Evolution
OrthoDB1469
GeneTree (enSembl)ENSG00000170373
Phylogenetic Trees/Animal Genes : TreeFamCST1
HOVERGENP01037
HOGENOMP01037
Homologs : HomoloGeneCST1
Homology/Alignments : Family Browser (UCSC)CST1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCST1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CST1
dbVarCST1
ClinVarCST1
1000_GenomesCST1 
Exome Variant ServerCST1
ExAC (Exome Aggregation Consortium)CST1 (select the gene name)
Genetic variants : HAPMAP1469
Genomic Variants (DGV)CST1 [DGVbeta]
DECIPHERCST1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCST1 
Mutations
ICGC Data PortalCST1 
TCGA Data PortalCST1 
Broad Tumor PortalCST1
OASIS PortalCST1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCST1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCST1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CST1
DgiDB (Drug Gene Interaction Database)CST1
DoCM (Curated mutations)CST1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CST1 (select a term)
intoGenCST1
Cancer3DCST1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123855   
Orphanet
MedgenCST1
Genetic Testing Registry CST1
NextProtP01037 [Medical]
TSGene1469
GENETestsCST1
Target ValidationCST1
Huge Navigator CST1 [HugePedia]
snp3D : Map Gene to Disease1469
BioCentury BCIQCST1
ClinGenCST1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1469
Chemical/Pharm GKB GenePA26972
Clinical trialCST1
Miscellaneous
canSAR (ICR)CST1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCST1
EVEXCST1
GoPubMedCST1
iHOPCST1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:58:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.