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CST11 (cystatin 11)

Identity

Alias_namesCST8L
Alias_symbol (synonym)dJ322G13.6
CTES2
Other aliasSC13
HGNC (Hugo) CST11
LocusID (NCBI) 140880
Atlas_Id 62141
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23431041 and ends at 23433482 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CST11   15959
Cards
Entrez_Gene (NCBI)CST11  140880  cystatin 11
AliasesCST8L; CTES2; SC13; dJ322G13.6
GeneCards (Weizmann)CST11
Ensembl hg19 (Hinxton)ENSG00000125831 [Gene_View]  chr20:23431041-23433482 [Contig_View]  CST11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125831 [Gene_View]  chr20:23431041-23433482 [Contig_View]  CST11 [Vega]
ICGC DataPortalENSG00000125831
TCGA cBioPortalCST11
AceView (NCBI)CST11
Genatlas (Paris)CST11
WikiGenes140880
SOURCE (Princeton)CST11
Genetics Home Reference (NIH)CST11
Genomic and cartography
GoldenPath hg19 (UCSC)CST11  -     chr20:23431041-23433482 -  20p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CST11  -     20p11.21   [Description]    (hg38-Dec_2013)
EnsemblCST11 - 20p11.21 [CytoView hg19]  CST11 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICST11 [Mapview hg19]  CST11 [Mapview hg38]
OMIM609731   
Gene and transcription
Genbank (Entrez)AF335480 AF335481 BC121079 BC121080
RefSeq transcript (Entrez)NM_080830 NM_130794
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)CST11
Cluster EST : UnigeneHs.128100 [ NCBI ]
CGAP (NCI)Hs.128100
Alternative Splicing GalleryENSG00000125831
Gene ExpressionCST11 [ NCBI-GEO ]   CST11 [ EBI - ARRAY_EXPRESS ]   CST11 [ SEEK ]   CST11 [ MEM ]
Gene Expression Viewer (FireBrowse)CST11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140880
GTEX Portal (Tissue expression)CST11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H112   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H112  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H112
Splice isoforms : SwissVarQ9H112
PhosPhoSitePlusQ9H112
Domains : Interpro (EBI)Cystatin    Prot_inh_cystat   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)CST11
DMDM Disease mutations140880
Blocks (Seattle)CST11
SuperfamilyQ9H112
Human Protein AtlasENSG00000125831
Peptide AtlasQ9H112
HPRD16767
IPIIPI00154966   IPI00107733   
Protein Interaction databases
DIP (DOE-UCLA)Q9H112
IntAct (EBI)Q9H112
FunCoupENSG00000125831
BioGRIDCST11
STRING (EMBL)CST11
ZODIACCST11
Ontologies - Pathways
QuickGOQ9H112
Ontology : AmiGOcysteine-type endopeptidase inhibitor activity  nucleus  cytoplasm  negative regulation of endopeptidase activity  defense response to bacterium  
Ontology : EGO-EBIcysteine-type endopeptidase inhibitor activity  nucleus  cytoplasm  negative regulation of endopeptidase activity  defense response to bacterium  
NDEx NetworkCST11
Atlas of Cancer Signalling NetworkCST11
Wikipedia pathwaysCST11
Orthology - Evolution
OrthoDB140880
GeneTree (enSembl)ENSG00000125831
Phylogenetic Trees/Animal Genes : TreeFamCST11
HOVERGENQ9H112
HOGENOMQ9H112
Homologs : HomoloGeneCST11
Homology/Alignments : Family Browser (UCSC)CST11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCST11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CST11
dbVarCST11
ClinVarCST11
1000_GenomesCST11 
Exome Variant ServerCST11
ExAC (Exome Aggregation Consortium)CST11 (select the gene name)
Genetic variants : HAPMAP140880
Genomic Variants (DGV)CST11 [DGVbeta]
DECIPHER (Syndromes)20:23431041-23433482  ENSG00000125831
CONAN: Copy Number AnalysisCST11 
Mutations
ICGC Data PortalCST11 
TCGA Data PortalCST11 
Broad Tumor PortalCST11
OASIS PortalCST11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCST11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCST11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CST11
DgiDB (Drug Gene Interaction Database)CST11
DoCM (Curated mutations)CST11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CST11 (select a term)
intoGenCST11
Cancer3DCST11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609731   
Orphanet
MedgenCST11
Genetic Testing Registry CST11
NextProtQ9H112 [Medical]
TSGene140880
GENETestsCST11
Huge Navigator CST11 [HugePedia]
snp3D : Map Gene to Disease140880
BioCentury BCIQCST11
ClinGenCST11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140880
Chemical/Pharm GKB GenePA26974
Clinical trialCST11
Miscellaneous
canSAR (ICR)CST11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCST11
EVEXCST11
GoPubMedCST11
iHOPCST11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:31 CET 2017

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