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CST4 (cystatin S)

Identity

Other alias-
HGNC (Hugo) CST4
LocusID (NCBI) 1472
Atlas_Id 62144
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23685640 and ends at 23689025 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2C (7q36.1) / CST4 (20p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CST4   2476
Cards
Entrez_Gene (NCBI)CST4  1472  cystatin S
Aliases
GeneCards (Weizmann)CST4
Ensembl hg19 (Hinxton)ENSG00000101441 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101441 [Gene_View]  chr20:23685640-23689025 [Contig_View]  CST4 [Vega]
ICGC DataPortalENSG00000101441
TCGA cBioPortalCST4
AceView (NCBI)CST4
Genatlas (Paris)CST4
WikiGenes1472
SOURCE (Princeton)CST4
Genetics Home Reference (NIH)CST4
Genomic and cartography
GoldenPath hg38 (UCSC)CST4  -     chr20:23685640-23689025 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CST4  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCST4 - 20p11.21 [CytoView hg19]  CST4 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICST4 [Mapview hg19]  CST4 [Mapview hg38]
OMIM123857   
Gene and transcription
Genbank (Entrez)BC065714 BC074952 BC074953 HQ447582 X54667
RefSeq transcript (Entrez)NM_001899
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CST4
Cluster EST : UnigeneHs.654549 [ NCBI ]
CGAP (NCI)Hs.654549
Alternative Splicing GalleryENSG00000101441
Gene ExpressionCST4 [ NCBI-GEO ]   CST4 [ EBI - ARRAY_EXPRESS ]   CST4 [ SEEK ]   CST4 [ MEM ]
Gene Expression Viewer (FireBrowse)CST4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1472
GTEX Portal (Tissue expression)CST4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01036   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01036  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01036
Splice isoforms : SwissVarP01036
PhosPhoSitePlusP01036
Domaine pattern : Prosite (Expaxy)CYSTATIN (PS00287)   
Domains : Interpro (EBI)Cystatin    Cystatin_dom    Prot_inh_cystat_CS   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)CST4
DMDM Disease mutations1472
Blocks (Seattle)CST4
SuperfamilyP01036
Human Protein AtlasENSG00000101441
Peptide AtlasP01036
HPRD00462
IPIIPI00032294   
Protein Interaction databases
DIP (DOE-UCLA)P01036
IntAct (EBI)P01036
FunCoupENSG00000101441
BioGRIDCST4
STRING (EMBL)CST4
ZODIACCST4
Ontologies - Pathways
QuickGOP01036
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  retina homeostasis  cysteine-type endopeptidase inhibitor activity  extracellular space  negative regulation of endopeptidase activity  negative regulation of proteolysis  extracellular exosome  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  retina homeostasis  cysteine-type endopeptidase inhibitor activity  extracellular space  negative regulation of endopeptidase activity  negative regulation of proteolysis  extracellular exosome  
Pathways : KEGGSalivary secretion   
NDEx NetworkCST4
Atlas of Cancer Signalling NetworkCST4
Wikipedia pathwaysCST4
Orthology - Evolution
OrthoDB1472
GeneTree (enSembl)ENSG00000101441
Phylogenetic Trees/Animal Genes : TreeFamCST4
HOVERGENP01036
HOGENOMP01036
Homologs : HomoloGeneCST4
Homology/Alignments : Family Browser (UCSC)CST4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCST4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CST4
dbVarCST4
ClinVarCST4
1000_GenomesCST4 
Exome Variant ServerCST4
ExAC (Exome Aggregation Consortium)CST4 (select the gene name)
Genetic variants : HAPMAP1472
Genomic Variants (DGV)CST4 [DGVbeta]
DECIPHERCST4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCST4 
Mutations
ICGC Data PortalCST4 
TCGA Data PortalCST4 
Broad Tumor PortalCST4
OASIS PortalCST4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCST4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCST4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CST4
DgiDB (Drug Gene Interaction Database)CST4
DoCM (Curated mutations)CST4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CST4 (select a term)
intoGenCST4
Cancer3DCST4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123857   
Orphanet
MedgenCST4
Genetic Testing Registry CST4
NextProtP01036 [Medical]
TSGene1472
GENETestsCST4
Target ValidationCST4
Huge Navigator CST4 [HugePedia]
snp3D : Map Gene to Disease1472
BioCentury BCIQCST4
ClinGenCST4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1472
Chemical/Pharm GKB GenePA26977
Clinical trialCST4
Miscellaneous
canSAR (ICR)CST4 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCST4
EVEXCST4
GoPubMedCST4
iHOPCST4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:30 CEST 2017

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