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CST5 (cystatin D)

Identity

Other alias-
HGNC (Hugo) CST5
LocusID (NCBI) 1473
Atlas_Id 51126
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23875935 and ends at 23879743 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CST5   2477
Cards
Entrez_Gene (NCBI)CST5  1473  cystatin D
Aliases
GeneCards (Weizmann)CST5
Ensembl hg19 (Hinxton)ENSG00000170367 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170367 [Gene_View]  chr20:23875935-23879743 [Contig_View]  CST5 [Vega]
ICGC DataPortalENSG00000170367
TCGA cBioPortalCST5
AceView (NCBI)CST5
Genatlas (Paris)CST5
WikiGenes1473
SOURCE (Princeton)CST5
Genetics Home Reference (NIH)CST5
Genomic and cartography
GoldenPath hg38 (UCSC)CST5  -     chr20:23875935-23879743 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CST5  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCST5 - 20p11.21 [CytoView hg19]  CST5 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICST5 [Mapview hg19]  CST5 [Mapview hg38]
OMIM123858   
Gene and transcription
Genbank (Entrez)BC062678 BC069514 CB985957 HQ447459 X70377
RefSeq transcript (Entrez)NM_001900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CST5
Cluster EST : UnigeneHs.121489 [ NCBI ]
CGAP (NCI)Hs.121489
Alternative Splicing GalleryENSG00000170367
Gene ExpressionCST5 [ NCBI-GEO ]   CST5 [ EBI - ARRAY_EXPRESS ]   CST5 [ SEEK ]   CST5 [ MEM ]
Gene Expression Viewer (FireBrowse)CST5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1473
GTEX Portal (Tissue expression)CST5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28325   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP28325  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP28325
Splice isoforms : SwissVarP28325
PhosPhoSitePlusP28325
Domaine pattern : Prosite (Expaxy)CYSTATIN (PS00287)   
Domains : Interpro (EBI)Cystatin    Cystatin_dom    Prot_inh_cystat_CS   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)CST5
DMDM Disease mutations1473
Blocks (Seattle)CST5
PDB (SRS)1RN7    1ROA   
PDB (PDBSum)1RN7    1ROA   
PDB (IMB)1RN7    1ROA   
PDB (RSDB)1RN7    1ROA   
Structural Biology KnowledgeBase1RN7    1ROA   
SCOP (Structural Classification of Proteins)1RN7    1ROA   
CATH (Classification of proteins structures)1RN7    1ROA   
SuperfamilyP28325
Human Protein AtlasENSG00000170367
Peptide AtlasP28325
HPRD00463
IPIIPI00002851   
Protein Interaction databases
DIP (DOE-UCLA)P28325
IntAct (EBI)P28325
FunCoupENSG00000170367
BioGRIDCST5
STRING (EMBL)CST5
ZODIACCST5
Ontologies - Pathways
QuickGOP28325
Ontology : AmiGOcysteine-type endopeptidase inhibitor activity  protein binding  extracellular region  negative regulation of endopeptidase activity  extracellular exosome  
Ontology : EGO-EBIcysteine-type endopeptidase inhibitor activity  protein binding  extracellular region  negative regulation of endopeptidase activity  extracellular exosome  
Pathways : KEGGSalivary secretion   
NDEx NetworkCST5
Atlas of Cancer Signalling NetworkCST5
Wikipedia pathwaysCST5
Orthology - Evolution
OrthoDB1473
GeneTree (enSembl)ENSG00000170367
Phylogenetic Trees/Animal Genes : TreeFamCST5
HOVERGENP28325
HOGENOMP28325
Homologs : HomoloGeneCST5
Homology/Alignments : Family Browser (UCSC)CST5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCST5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CST5
dbVarCST5
ClinVarCST5
1000_GenomesCST5 
Exome Variant ServerCST5
ExAC (Exome Aggregation Consortium)CST5 (select the gene name)
Genetic variants : HAPMAP1473
Genomic Variants (DGV)CST5 [DGVbeta]
DECIPHERCST5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCST5 
Mutations
ICGC Data PortalCST5 
TCGA Data PortalCST5 
Broad Tumor PortalCST5
OASIS PortalCST5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCST5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCST5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CST5
DgiDB (Drug Gene Interaction Database)CST5
DoCM (Curated mutations)CST5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CST5 (select a term)
intoGenCST5
Cancer3DCST5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123858   
Orphanet
MedgenCST5
Genetic Testing Registry CST5
NextProtP28325 [Medical]
TSGene1473
GENETestsCST5
Target ValidationCST5
Huge Navigator CST5 [HugePedia]
snp3D : Map Gene to Disease1473
BioCentury BCIQCST5
ClinGenCST5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1473
Chemical/Pharm GKB GenePA26978
Clinical trialCST5
Miscellaneous
canSAR (ICR)CST5 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCST5
EVEXCST5
GoPubMedCST5
iHOPCST5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:50:49 CEST 2017

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