Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CST7 (cystatin F)

Identity

Alias_namescystatin F (leukocystatin)
Other aliasCMAP
HGNC (Hugo) CST7
LocusID (NCBI) 8530
Atlas_Id 40179
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 24949230 and ends at 24959928 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NRROS (3q29) / CST7 (20p11.21)ORC6 (16q11.2) / CST7 (20p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CST7   2479
Cards
Entrez_Gene (NCBI)CST7  8530  cystatin F
AliasesCMAP
GeneCards (Weizmann)CST7
Ensembl hg19 (Hinxton)ENSG00000077984 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077984 [Gene_View]  chr20:24949230-24959928 [Contig_View]  CST7 [Vega]
ICGC DataPortalENSG00000077984
TCGA cBioPortalCST7
AceView (NCBI)CST7
Genatlas (Paris)CST7
WikiGenes8530
SOURCE (Princeton)CST7
Genetics Home Reference (NIH)CST7
Genomic and cartography
GoldenPath hg38 (UCSC)CST7  -     chr20:24949230-24959928 +  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CST7  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCST7 - 20p11.21 [CytoView hg19]  CST7 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICST7 [Mapview hg19]  CST7 [Mapview hg38]
OMIM603253   
Gene and transcription
Genbank (Entrez)AB015225 AF031824 AF036342 BC015507 BG547285
RefSeq transcript (Entrez)NM_003650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CST7
Cluster EST : UnigeneHs.143212 [ NCBI ]
CGAP (NCI)Hs.143212
Alternative Splicing GalleryENSG00000077984
Gene ExpressionCST7 [ NCBI-GEO ]   CST7 [ EBI - ARRAY_EXPRESS ]   CST7 [ SEEK ]   CST7 [ MEM ]
Gene Expression Viewer (FireBrowse)CST7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8530
GTEX Portal (Tissue expression)CST7
Human Protein AtlasENSG00000077984-CST7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76096   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76096  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76096
Splice isoforms : SwissVarO76096
PhosPhoSitePlusO76096
Domains : Interpro (EBI)Cystatin    Cystatin_dom   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)CST7
DMDM Disease mutations8530
Blocks (Seattle)CST7
PDB (SRS)2CH9   
PDB (PDBSum)2CH9   
PDB (IMB)2CH9   
PDB (RSDB)2CH9   
Structural Biology KnowledgeBase2CH9   
SCOP (Structural Classification of Proteins)2CH9   
CATH (Classification of proteins structures)2CH9   
SuperfamilyO76096
Human Protein Atlas [tissue]ENSG00000077984-CST7 [tissue]
Peptide AtlasO76096
HPRD04458
IPIIPI00216569   
Protein Interaction databases
DIP (DOE-UCLA)O76096
IntAct (EBI)O76096
FunCoupENSG00000077984
BioGRIDCST7
STRING (EMBL)CST7
ZODIACCST7
Ontologies - Pathways
QuickGOO76096
Ontology : AmiGOendopeptidase inhibitor activity  cysteine-type endopeptidase inhibitor activity  protein binding  extracellular region  cytoplasm  immune response  negative regulation of endopeptidase activity  
Ontology : EGO-EBIendopeptidase inhibitor activity  cysteine-type endopeptidase inhibitor activity  protein binding  extracellular region  cytoplasm  immune response  negative regulation of endopeptidase activity  
NDEx NetworkCST7
Atlas of Cancer Signalling NetworkCST7
Wikipedia pathwaysCST7
Orthology - Evolution
OrthoDB8530
GeneTree (enSembl)ENSG00000077984
Phylogenetic Trees/Animal Genes : TreeFamCST7
HOVERGENO76096
HOGENOMO76096
Homologs : HomoloGeneCST7
Homology/Alignments : Family Browser (UCSC)CST7
Gene fusions - Rearrangements
Tumor Fusion PortalCST7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCST7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CST7
dbVarCST7
ClinVarCST7
1000_GenomesCST7 
Exome Variant ServerCST7
ExAC (Exome Aggregation Consortium)ENSG00000077984
GNOMAD BrowserENSG00000077984
Genetic variants : HAPMAP8530
Genomic Variants (DGV)CST7 [DGVbeta]
DECIPHERCST7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCST7 
Mutations
ICGC Data PortalCST7 
TCGA Data PortalCST7 
Broad Tumor PortalCST7
OASIS PortalCST7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCST7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCST7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CST7
DgiDB (Drug Gene Interaction Database)CST7
DoCM (Curated mutations)CST7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CST7 (select a term)
intoGenCST7
Cancer3DCST7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603253   
Orphanet
DisGeNETCST7
MedgenCST7
Genetic Testing Registry CST7
NextProtO76096 [Medical]
TSGene8530
GENETestsCST7
Target ValidationCST7
Huge Navigator CST7 [HugePedia]
snp3D : Map Gene to Disease8530
BioCentury BCIQCST7
ClinGenCST7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8530
Chemical/Pharm GKB GenePA26980
Clinical trialCST7
Miscellaneous
canSAR (ICR)CST7 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCST7
EVEXCST7
GoPubMedCST7
iHOPCST7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:09:15 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.