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CST9 (cystatin 9)

Identity

Alias_symbol (synonym)CLM
CTES7A
Other alias
HGNC (Hugo) CST9
LocusID (NCBI) 128822
Atlas_Id 62146
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23602410 and ends at 23605973 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CST9   13261
Cards
Entrez_Gene (NCBI)CST9  128822  cystatin 9
AliasesCLM; CTES7A
GeneCards (Weizmann)CST9
Ensembl hg19 (Hinxton)ENSG00000173335 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173335 [Gene_View]  chr20:23602410-23605973 [Contig_View]  CST9 [Vega]
ICGC DataPortalENSG00000173335
TCGA cBioPortalCST9
AceView (NCBI)CST9
Genatlas (Paris)CST9
WikiGenes128822
SOURCE (Princeton)CST9
Genetics Home Reference (NIH)CST9
Genomic and cartography
GoldenPath hg38 (UCSC)CST9  -     chr20:23602410-23605973 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CST9  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCST9 - 20p11.21 [CytoView hg19]  CST9 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICST9 [Mapview hg19]  CST9 [Mapview hg38]
OMIM616543   
Gene and transcription
Genbank (Entrez)AF494536 BC137302 BC137303
RefSeq transcript (Entrez)NM_001008693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CST9
Cluster EST : UnigeneHs.698020 [ NCBI ]
CGAP (NCI)Hs.698020
Alternative Splicing GalleryENSG00000173335
Gene ExpressionCST9 [ NCBI-GEO ]   CST9 [ EBI - ARRAY_EXPRESS ]   CST9 [ SEEK ]   CST9 [ MEM ]
Gene Expression Viewer (FireBrowse)CST9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128822
GTEX Portal (Tissue expression)CST9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W186   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W186  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W186
Splice isoforms : SwissVarQ5W186
PhosPhoSitePlusQ5W186
Domains : Interpro (EBI)Cystatin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CST9
DMDM Disease mutations128822
Blocks (Seattle)CST9
SuperfamilyQ5W186
Human Protein AtlasENSG00000173335
Peptide AtlasQ5W186
HPRD16768
IPIIPI00397227   
Protein Interaction databases
DIP (DOE-UCLA)Q5W186
IntAct (EBI)Q5W186
FunCoupENSG00000173335
BioGRIDCST9
STRING (EMBL)CST9
ZODIACCST9
Ontologies - Pathways
QuickGOQ5W186
Ontology : AmiGOcysteine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  antimicrobial humoral response  
Ontology : EGO-EBIcysteine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  antimicrobial humoral response  
NDEx NetworkCST9
Atlas of Cancer Signalling NetworkCST9
Wikipedia pathwaysCST9
Orthology - Evolution
OrthoDB128822
GeneTree (enSembl)ENSG00000173335
Phylogenetic Trees/Animal Genes : TreeFamCST9
HOVERGENQ5W186
HOGENOMQ5W186
Homologs : HomoloGeneCST9
Homology/Alignments : Family Browser (UCSC)CST9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCST9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CST9
dbVarCST9
ClinVarCST9
1000_GenomesCST9 
Exome Variant ServerCST9
ExAC (Exome Aggregation Consortium)CST9 (select the gene name)
Genetic variants : HAPMAP128822
Genomic Variants (DGV)CST9 [DGVbeta]
DECIPHERCST9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCST9 
Mutations
ICGC Data PortalCST9 
TCGA Data PortalCST9 
Broad Tumor PortalCST9
OASIS PortalCST9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCST9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCST9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CST9
DgiDB (Drug Gene Interaction Database)CST9
DoCM (Curated mutations)CST9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CST9 (select a term)
intoGenCST9
Cancer3DCST9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616543   
Orphanet
MedgenCST9
Genetic Testing Registry CST9
NextProtQ5W186 [Medical]
TSGene128822
GENETestsCST9
Huge Navigator CST9 [HugePedia]
snp3D : Map Gene to Disease128822
BioCentury BCIQCST9
ClinGenCST9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128822
Chemical/Pharm GKB GenePA134898267
Clinical trialCST9
Miscellaneous
canSAR (ICR)CST9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCST9
EVEXCST9
GoPubMedCST9
iHOPCST9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:07:09 CEST 2017

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