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CSTF1 (cleavage stimulation factor subunit 1)

Identity

Alias (NCBI)CstF-50
CstFp50
HGNC (Hugo) CSTF1
HGNC Previous namecleavage stimulation factor, 3' pre-RNA, subunit 1, 50kD
 cleavage stimulation factor, 3' pre-RNA, subunit 1
LocusID (NCBI) 1477
Atlas_Id 40182
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 56392645 and ends at 56406362 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSTF1 (20q13.2) / BLM (15q26.1)CSTF1 (20q13.2) / CSTF1 (20q13.2)GADD45GIP1 (19p13.2) / CSTF1 (20q13.2)
PRRC2C (1q24.3) / CSTF1 (20q13.2)CSTF1 20q13.2 / BLM 15q26.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CSTF1   2483
Cards
Entrez_Gene (NCBI)CSTF1    cleavage stimulation factor subunit 1
AliasesCstF-50; CstFp50
GeneCards (Weizmann)CSTF1
Ensembl hg19 (Hinxton)ENSG00000101138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101138 [Gene_View]  ENSG00000101138 [Sequence]  chr20:56392645-56406362 [Contig_View]  CSTF1 [Vega]
ICGC DataPortalENSG00000101138
TCGA cBioPortalCSTF1
AceView (NCBI)CSTF1
Genatlas (Paris)CSTF1
SOURCE (Princeton)CSTF1
Genetics Home Reference (NIH)CSTF1
Genomic and cartography
GoldenPath hg38 (UCSC)CSTF1  -     chr20:56392645-56406362 +  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSTF1  -     20q13.2   [Description]    (hg19-Feb_2009)
GoldenPathCSTF1 - 20q13.2 [CytoView hg19]  CSTF1 - 20q13.2 [CytoView hg38]
ImmunoBaseENSG00000101138
Genome Data Viewer NCBICSTF1 [Mapview hg19]  
OMIM600369   
Gene and transcription
Genbank (Entrez)AA037145 AK293182 AK307144 AK312774 BC001011
RefSeq transcript (Entrez)NM_001033521 NM_001033522 NM_001324
Consensus coding sequences : CCDS (NCBI)CSTF1
Gene ExpressionCSTF1 [ NCBI-GEO ]   CSTF1 [ EBI - ARRAY_EXPRESS ]   CSTF1 [ SEEK ]   CSTF1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSTF1 [ Firebrowse - Broad ]
GenevisibleExpression of CSTF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1477
GTEX Portal (Tissue expression)CSTF1
Human Protein AtlasENSG00000101138-CSTF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05048   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05048  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05048
PhosPhoSitePlusQ05048
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CSTF1_dimer    CSTF1_dimer_sf    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)CSTF1_dimer (PF16699)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam16699    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)CSTF1
PDB (RSDB)6B3X   
PDB Europe6B3X   
PDB (PDBSum)6B3X   
PDB (IMB)6B3X   
Structural Biology KnowledgeBase6B3X   
SCOP (Structural Classification of Proteins)6B3X   
CATH (Classification of proteins structures)6B3X   
SuperfamilyQ05048
AlphaFold pdb e-kbQ05048   
Human Protein Atlas [tissue]ENSG00000101138-CSTF1 [tissue]
HPRD02653
Protein Interaction databases
DIP (DOE-UCLA)Q05048
IntAct (EBI)Q05048
BioGRIDCSTF1
STRING (EMBL)CSTF1
ZODIACCSTF1
Ontologies - Pathways
QuickGOQ05048
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  mRNA cleavage stimulating factor complex  termination of RNA polymerase II transcription  mRNA 3'-end processing  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  mRNA cleavage stimulating factor complex  termination of RNA polymerase II transcription  mRNA 3'-end processing  
Pathways : BIOCARTAPolyadenylation of mRNA [Genes]   
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkCSTF1
Atlas of Cancer Signalling NetworkCSTF1
Wikipedia pathwaysCSTF1
Orthology - Evolution
OrthoDB1477
GeneTree (enSembl)ENSG00000101138
Phylogenetic Trees/Animal Genes : TreeFamCSTF1
Homologs : HomoloGeneCSTF1
Homology/Alignments : Family Browser (UCSC)CSTF1
Gene fusions - Rearrangements
Fusion : MitelmanCSTF1/BLM [20q13.2/15q26.1]  
Fusion : MitelmanGADD45GIP1/CSTF1 [19p13.2/20q13.2]  
Fusion : QuiverCSTF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSTF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSTF1
dbVarCSTF1
ClinVarCSTF1
MonarchCSTF1
1000_GenomesCSTF1 
Exome Variant ServerCSTF1
GNOMAD BrowserENSG00000101138
Varsome BrowserCSTF1
ACMGCSTF1 variants
VarityQ05048
Genomic Variants (DGV)CSTF1 [DGVbeta]
DECIPHERCSTF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSTF1 
Mutations
ICGC Data PortalCSTF1 
TCGA Data PortalCSTF1 
Broad Tumor PortalCSTF1
OASIS PortalCSTF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSTF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCSTF1
Mutations and Diseases : HGMDCSTF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCSTF1
DgiDB (Drug Gene Interaction Database)CSTF1
DoCM (Curated mutations)CSTF1
CIViC (Clinical Interpretations of Variants in Cancer)CSTF1
Cancer3DCSTF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600369   
Orphanet
DisGeNETCSTF1
MedgenCSTF1
Genetic Testing Registry CSTF1
NextProtQ05048 [Medical]
GENETestsCSTF1
Target ValidationCSTF1
Huge Navigator CSTF1 [HugePedia]
ClinGenCSTF1
Clinical trials, drugs, therapy
MyCancerGenomeCSTF1
Protein Interactions : CTDCSTF1
Pharm GKB GenePA26985
PharosQ05048
Clinical trialCSTF1
Miscellaneous
canSAR (ICR)CSTF1
HarmonizomeCSTF1
DataMed IndexCSTF1
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCSTF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:05:26 CEST 2021

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