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CSTF2T (cleavage stimulation factor subunit 2 tau variant)

Identity

Alias_namescleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
cleavage stimulation factor, 3' pre-RNA, subunit 2, tau variant
cleavage stimulation factor subunit 2, tau variant
Alias_symbol (synonym)DKFZp434C1013
KIAA0689
CstF-64T
tauCstF-64
Other alias
HGNC (Hugo) CSTF2T
LocusID (NCBI) 23283
Atlas_Id 46387
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 51695486 and ends at 51699595 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSTF2T   17086
Cards
Entrez_Gene (NCBI)CSTF2T  23283  cleavage stimulation factor subunit 2 tau variant
AliasesCstF-64T
GeneCards (Weizmann)CSTF2T
Ensembl hg19 (Hinxton)ENSG00000177613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177613 [Gene_View]  chr10:51695486-51699595 [Contig_View]  CSTF2T [Vega]
ICGC DataPortalENSG00000177613
TCGA cBioPortalCSTF2T
AceView (NCBI)CSTF2T
Genatlas (Paris)CSTF2T
WikiGenes23283
SOURCE (Princeton)CSTF2T
Genetics Home Reference (NIH)CSTF2T
Genomic and cartography
GoldenPath hg38 (UCSC)CSTF2T  -     chr10:51695486-51699595 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSTF2T  -     10q21.1   [Description]    (hg19-Feb_2009)
EnsemblCSTF2T - 10q21.1 [CytoView hg19]  CSTF2T - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBICSTF2T [Mapview hg19]  CSTF2T [Mapview hg38]
OMIM611968   
Gene and transcription
Genbank (Entrez)AB014589 AK222574 AK314318 AL136747 AY130299
RefSeq transcript (Entrez)NM_015235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSTF2T
Cluster EST : UnigeneHs.591358 [ NCBI ]
CGAP (NCI)Hs.591358
Alternative Splicing GalleryENSG00000177613
Gene ExpressionCSTF2T [ NCBI-GEO ]   CSTF2T [ EBI - ARRAY_EXPRESS ]   CSTF2T [ SEEK ]   CSTF2T [ MEM ]
Gene Expression Viewer (FireBrowse)CSTF2T [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23283
GTEX Portal (Tissue expression)CSTF2T
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0L4
Splice isoforms : SwissVarQ9H0L4
PhosPhoSitePlusQ9H0L4
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)CSTF2_hinge    CSTF_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)CSTF2_hinge (PF14327)    CSTF_C (PF14304)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam14327    pfam14304    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)CSTF2T
DMDM Disease mutations23283
Blocks (Seattle)CSTF2T
SuperfamilyQ9H0L4
Human Protein AtlasENSG00000177613
Peptide AtlasQ9H0L4
HPRD09900
IPIIPI00550906   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0L4
IntAct (EBI)Q9H0L4
FunCoupENSG00000177613
BioGRIDCSTF2T
STRING (EMBL)CSTF2T
ZODIACCSTF2T
Ontologies - Pathways
QuickGOQ9H0L4
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  intracellular  nucleoplasm  mRNA cleavage and polyadenylation specificity factor complex  termination of RNA polymerase II transcription  mRNA 3'-end processing  pre-mRNA cleavage required for polyadenylation  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  intracellular  nucleoplasm  mRNA cleavage and polyadenylation specificity factor complex  termination of RNA polymerase II transcription  mRNA 3'-end processing  pre-mRNA cleavage required for polyadenylation  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkCSTF2T
Atlas of Cancer Signalling NetworkCSTF2T
Wikipedia pathwaysCSTF2T
Orthology - Evolution
OrthoDB23283
GeneTree (enSembl)ENSG00000177613
Phylogenetic Trees/Animal Genes : TreeFamCSTF2T
HOVERGENQ9H0L4
HOGENOMQ9H0L4
Homologs : HomoloGeneCSTF2T
Homology/Alignments : Family Browser (UCSC)CSTF2T
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSTF2T [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSTF2T
dbVarCSTF2T
ClinVarCSTF2T
1000_GenomesCSTF2T 
Exome Variant ServerCSTF2T
ExAC (Exome Aggregation Consortium)CSTF2T (select the gene name)
Genetic variants : HAPMAP23283
Genomic Variants (DGV)CSTF2T [DGVbeta]
DECIPHERCSTF2T [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSTF2T 
Mutations
ICGC Data PortalCSTF2T 
TCGA Data PortalCSTF2T 
Broad Tumor PortalCSTF2T
OASIS PortalCSTF2T [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSTF2T  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSTF2T
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSTF2T
DgiDB (Drug Gene Interaction Database)CSTF2T
DoCM (Curated mutations)CSTF2T (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSTF2T (select a term)
intoGenCSTF2T
Cancer3DCSTF2T(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611968   
Orphanet
MedgenCSTF2T
Genetic Testing Registry CSTF2T
NextProtQ9H0L4 [Medical]
TSGene23283
GENETestsCSTF2T
Huge Navigator CSTF2T [HugePedia]
snp3D : Map Gene to Disease23283
BioCentury BCIQCSTF2T
ClinGenCSTF2T
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23283
Chemical/Pharm GKB GenePA134933809
Clinical trialCSTF2T
Miscellaneous
canSAR (ICR)CSTF2T (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSTF2T
EVEXCSTF2T
GoPubMedCSTF2T
iHOPCSTF2T
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:12:02 CEST 2017

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