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CSTF2T (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant)

Identity

Other namesCstF-64T
HGNC (Hugo) CSTF2T
LocusID (NCBI) 23283
Location 10q21.1
Location_base_pair Starts at 53455246 and ends at 53459355 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CSTF2T   17086
Cards
Entrez_Gene (NCBI)CSTF2T  23283  cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
GeneCards (Weizmann)CSTF2T
Ensembl (Hinxton)ENSG00000177613 [Gene_View]  chr10:53455246-53459355 [Contig_View]  CSTF2T [Vega]
ICGC DataPortalENSG00000177613
cBioPortalCSTF2T
AceView (NCBI)CSTF2T
Genatlas (Paris)CSTF2T
WikiGenes23283
SOURCE (Princeton)NM_015235
Genomic and cartography
GoldenPath (UCSC)CSTF2T  -  10q21.1   chr10:53455246-53459355 -  10q21.1   [Description]    (hg19-Feb_2009)
EnsemblCSTF2T - 10q21.1 [CytoView]
Mapping of homologs : NCBICSTF2T [Mapview]
OMIM611968   
Gene and transcription
Genbank (Entrez)AB014589 AK222574 AK314318 AL136747 AY130299
RefSeq transcript (Entrez)NM_015235
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_029982 NT_030059 NW_001837985 NW_004929376
Consensus coding sequences : CCDS (NCBI)CSTF2T
Cluster EST : UnigeneHs.591358 [ NCBI ]
CGAP (NCI)Hs.591358
Alternative Splicing : Fast-db (Paris)GSHG0004083
Alternative Splicing GalleryENSG00000177613
Gene ExpressionCSTF2T [ NCBI-GEO ]     CSTF2T [ SEEK ]   CSTF2T [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0L4 (Uniprot)
NextProtQ9H0L4  [Medical]
With graphics : InterProQ9H0L4
Splice isoforms : SwissVarQ9H0L4 (Swissvar)
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)CSTF2_hinge [organisation]   CSTF_C [organisation]   Nucleotide-bd_a/b_plait [organisation]   RRM_dom [organisation]  
Related proteins : CluSTrQ9H0L4
Domain families : Pfam (Sanger)CSTF2_hinge (PF14327)    CSTF_C (PF14304)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam14327    pfam14304    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM Disease mutations23283
Blocks (Seattle)Q9H0L4
Human Protein AtlasENSG00000177613 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9H0L4
HPRD09900
IPIIPI00550906   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0L4
IntAct (EBI)Q9H0L4
FunCoupENSG00000177613
BioGRIDCSTF2T
InParanoidQ9H0L4
Interologous Interaction database Q9H0L4
IntegromeDBCSTF2T
STRING (EMBL)CSTF2T
Ontologies - Pathways
Ontology : AmiGOnucleotide binding  intracellular  nucleus  mRNA processing  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  intracellular  nucleus  mRNA processing  poly(A) RNA binding  
Pathways : KEGGmRNA surveillance pathway   
Protein Interaction DatabaseCSTF2T
Wikipedia pathwaysCSTF2T
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CSTF2T
snp3D : Map Gene to Disease23283
SNP (GeneSNP Utah)CSTF2T
SNP : HGBaseCSTF2T
Genetic variants : HAPMAPCSTF2T
Exome VariantCSTF2T
1000_GenomesCSTF2T 
ICGC programENSG00000177613 
Somatic Mutations in Cancer : COSMICCSTF2T 
CONAN: Copy Number AnalysisCSTF2T 
Mutations and Diseases : HGMDCSTF2T
Mutations and Diseases : intOGenCSTF2T
Genomic VariantsCSTF2T  CSTF2T [DGVbeta]
dbVarCSTF2T
ClinVarCSTF2T
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM611968   
MedgenCSTF2T
GENETestsCSTF2T
Disease Genetic AssociationCSTF2T
Huge Navigator CSTF2T [HugePedia]  CSTF2T [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCSTF2T
Homology/Alignments : Family Browser (UCSC)CSTF2T
Phylogenetic Trees/Animal Genes : TreeFamCSTF2T
Chemical/Protein Interactions : CTD23283
Chemical/Pharm GKB GenePA134933809
Clinical trialCSTF2T
Cancer Resource (Charite)ENSG00000177613
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineCSTF2T
iHOPCSTF2T
OncoSearchCSTF2T
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:46:20 CEST 2014

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