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CSTF2T (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant)

Identity

Other namesCstF-64T
HGNC (Hugo) CSTF2T
LocusID (NCBI) 23283
Location 10q21.1
Location_base_pair Starts at 53455246 and ends at 53459355 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CSTF2T   17086
Entrez_Gene (NCBI)CSTF2T  23283  cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
Cards
GeneCards (Weizmann)CSTF2T
Ensembl (Hinxton)ENSG00000177613 [Gene_View]  chr10:53455246-53459355 [Contig_View]  CSTF2T [Vega]
AceView (NCBI)CSTF2T
Genatlas (Paris)CSTF2T
SOURCE (Stanford)NM_015235
Genomic and cartography
GoldenPath (UCSC)CSTF2T  -  10q21.1   chr10:53455246-53459355 -  10q21.1   [Description]    (hg19-Feb_2009)
EnsemblCSTF2T - 10q21.1 [CytoView]
Mapping of homologs : NCBICSTF2T [Mapview]
OMIM611968   
Gene and transcription
Genbank (Entrez)AB014589 AK222574 AK314318 AL136747 AY130299
RefSeq transcript (SRS)NM_015235
RefSeq transcript (Entrez)NM_015235
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_030059 NW_001837985 NW_004078068
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001837985 NW_004078068
Consensus coding sequences : CCDS (NCBI)CSTF2T
Cluster EST : UnigeneHs.591358 [ SRS ] Hs.591358 [ NCBI ]
CGAP (NCI)Hs.591358
Alternative Splicing : Fast-db (Paris)GSHG0004083
Alternative Splicing GalleryENSG00000177613
Gene ExpressionCSTF2T [ NCBI-GEO ]   CSTF2T [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0L4 (SRS) Q9H0L4 (Uniprot)
NextProtQ9H0L4
With graphics : InterProQ9H0L4
Splice isoforms : SwissVarQ9H0L4(Swissvar)
Domaine pattern : Prosite (SRS)RRM (PS50102)   
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (SRS)CSTF2_hinge    CSTF_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domains : Interpro (EBI)CSTF2_hinge    CSTF_C    Nucleotide-bd_a/b_plait    RRM_dom   
Related proteins : CluSTrQ9H0L4
Domain families : Pfam (SRS)CSTF2_hinge (PF14327)    CSTF_C (PF14304)    RRM_1 (PF00076)   
Domain families : Pfam (Sanger)CSTF2_hinge (PF14327)    CSTF_C (PF14304)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam14327    pfam14304    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM23283
Blocks (Seattle)Q9H0L4
Human Protein AtlasENSG00000177613
HPRD09900
IPIIPI00550906   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0L4
IntAct (EBI)Q9H0L4
FunCoupENSG00000177613
REACTOMECSTF2T
Protein Interaction Database23283
BioGRIDCSTF2T
InParanoidQ9H0L4
Interologous Interaction database Q9H0L4
IntegromeDBCSTF2T
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CSTF2T
SNP (GeneSNP Utah)CSTF2T
SNP : HGBaseCSTF2T
Genetic variants : HAPMAPCSTF2T
Somatic Mutations in Cancer : COSMICCSTF2T 
CONAN: Copy Number AnalysisCSTF2T 
Mutations and Diseases : HGMDCSTF2T
OMIM611968   
GENETests611968   
Disease Genetic AssociationCSTF2T
Huge Navigator CSTF2T [HugePedia]  CSTF2T [HugeCancerGEM]
Genomic VariantsCSTF2T  CSTF2T [DGVbeta]
ClinVarCSTF2T
snp3D : Map Gene to Disease23283
General knowledge
Homologs : HomoloGeneCSTF2T
Homology/Alignments : Family Browser (UCSC)CSTF2T
Phylogenetic Trees/Animal Genes : TreeFamCSTF2T
Chemical/Protein Interactions : CTD23283
Chemical/Pharm GKB GenePA134933809
Clinical trialCSTF2T
Cancer Resource (Charite)ENSG00000177613
Ontology : AmiGOnucleotide binding  RNA binding  intracellular  nucleus  mRNA processing  
Ontology : EGO-EBInucleotide binding  RNA binding  intracellular  nucleus  mRNA processing  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneCSTF2T
iHOPCSTF2T
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:34:59 CEST 2013
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