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CSTF2T (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant)

Identity

Other namesCstF-64T
HGNC (Hugo) CSTF2T
LocusID (NCBI) 23283
Location 10q21.1
Location_base_pair Starts at 53455246 and ends at 53459355 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CSTF2T   17086
Cards
Entrez_Gene (NCBI)CSTF2T  23283  cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
GeneCards (Weizmann)CSTF2T
Ensembl hg19 (Hinxton)ENSG00000177613 [Gene_View]  chr10:53455246-53459355 [Contig_View]  CSTF2T [Vega]
Ensembl hg38 (Hinxton)ENSG00000177613 [Gene_View]  chr10:53455246-53459355 [Contig_View]  CSTF2T [Vega]
ICGC DataPortalENSG00000177613
cBioPortalCSTF2T
AceView (NCBI)CSTF2T
Genatlas (Paris)CSTF2T
WikiGenes23283
SOURCE (Princeton)CSTF2T
Genomic and cartography
GoldenPath hg19 (UCSC)CSTF2T  -     chr10:53455246-53459355 -  10q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSTF2T  -     10q21.1   [Description]    (hg38-Dec_2013)
EnsemblCSTF2T - 10q21.1 [CytoView hg19]  CSTF2T - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBICSTF2T [Mapview hg19]  CSTF2T [Mapview hg38]
OMIM611968   
Gene and transcription
Genbank (Entrez)AB014589 AK222574 AK314318 AL136747 AY130299
RefSeq transcript (Entrez)NM_015235
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_029982 NT_030059 NW_001837985 NW_004929376
Consensus coding sequences : CCDS (NCBI)CSTF2T
Cluster EST : UnigeneHs.591358 [ NCBI ]
CGAP (NCI)Hs.591358
Alternative Splicing : Fast-db (Paris)GSHG0004083
Alternative Splicing GalleryENSG00000177613
Gene ExpressionCSTF2T [ NCBI-GEO ]     CSTF2T [ SEEK ]   CSTF2T [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0L4 (Uniprot)
NextProtQ9H0L4  [Medical]
With graphics : InterProQ9H0L4
Splice isoforms : SwissVarQ9H0L4 (Swissvar)
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)CSTF2_hinge    CSTF_C    Nucleotide-bd_a/b_plait    RRM_dom   
Related proteins : CluSTrQ9H0L4
Domain families : Pfam (Sanger)CSTF2_hinge (PF14327)    CSTF_C (PF14304)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam14327    pfam14304    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM Disease mutations23283
Blocks (Seattle)Q9H0L4
Human Protein AtlasENSG00000177613
Peptide AtlasQ9H0L4
HPRD09900
IPIIPI00550906   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0L4
IntAct (EBI)Q9H0L4
FunCoupENSG00000177613
BioGRIDCSTF2T
IntegromeDBCSTF2T
STRING (EMBL)CSTF2T
Ontologies - Pathways
QuickGOQ9H0L4
Ontology : AmiGOnucleotide binding  intracellular  nucleus  mRNA processing  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  intracellular  nucleus  mRNA processing  poly(A) RNA binding  
Pathways : KEGGmRNA surveillance pathway   
Protein Interaction DatabaseCSTF2T
DoCM (Curated mutations)CSTF2T
Wikipedia pathwaysCSTF2T
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCSTF2T [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSTF2T
dbVarCSTF2T
ClinVarCSTF2T
1000_GenomesCSTF2T 
Exome Variant ServerCSTF2T
SNP (GeneSNP Utah)CSTF2T
SNP : HGBaseCSTF2T
Genetic variants : HAPMAPCSTF2T
Genomic VariantsCSTF2T  CSTF2T [DGVbeta]
Mutations
ICGC Data PortalENSG00000177613 
Somatic Mutations in Cancer : COSMICCSTF2T 
CONAN: Copy Number AnalysisCSTF2T 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:53455246-53459355
Mutations and Diseases : HGMDCSTF2T
OMIM611968   
MedgenCSTF2T
NextProtQ9H0L4 [Medical]
GENETestsCSTF2T
Disease Genetic AssociationCSTF2T
Huge Navigator CSTF2T [HugePedia]  CSTF2T [HugeCancerGEM]
snp3D : Map Gene to Disease23283
DGIdb (Drug Gene Interaction db)CSTF2T
General knowledge
Homologs : HomoloGeneCSTF2T
Homology/Alignments : Family Browser (UCSC)CSTF2T
Phylogenetic Trees/Animal Genes : TreeFamCSTF2T
Chemical/Protein Interactions : CTD23283
Chemical/Pharm GKB GenePA134933809
Clinical trialCSTF2T
Cancer Resource (Charite)ENSG00000177613
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineCSTF2T
GoPubMedCSTF2T
iHOPCSTF2T
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:01:34 CET 2014

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