Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CSTF3-AS1 (CSTF3 antisense RNA 1 (head to head))

Identity

Other alias-
HGNC (Hugo) CSTF3-AS1
LocusID (NCBI) 338739
Atlas_Id 62149
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 33161657 and ends at 33191596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSTF3-AS1   27882
Cards
Entrez_Gene (NCBI)CSTF3-AS1  338739  CSTF3 antisense RNA 1 (head to head)
Aliases
GeneCards (Weizmann)CSTF3-AS1
Ensembl hg19 (Hinxton)ENSG00000247151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247151 [Gene_View]  chr11:33161657-33191596 [Contig_View]  CSTF3-AS1 [Vega]
ICGC DataPortalENSG00000247151
TCGA cBioPortalCSTF3-AS1
AceView (NCBI)CSTF3-AS1
Genatlas (Paris)CSTF3-AS1
WikiGenes338739
SOURCE (Princeton)CSTF3-AS1
Genetics Home Reference (NIH)CSTF3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CSTF3-AS1  -     chr11:33161657-33191596 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSTF3-AS1  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblCSTF3-AS1 - 11p13 [CytoView hg19]  CSTF3-AS1 - 11p13 [CytoView hg38]
Mapping of homologs : NCBICSTF3-AS1 [Mapview hg19]  CSTF3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043375 DA256284
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSTF3-AS1
Cluster EST : UnigeneHs.423476 [ NCBI ]
CGAP (NCI)Hs.423476
Alternative Splicing GalleryENSG00000247151
Gene ExpressionCSTF3-AS1 [ NCBI-GEO ]   CSTF3-AS1 [ EBI - ARRAY_EXPRESS ]   CSTF3-AS1 [ SEEK ]   CSTF3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSTF3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)338739
GTEX Portal (Tissue expression)CSTF3-AS1
Human Protein AtlasENSG00000247151-CSTF3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSTF3-AS1
DMDM Disease mutations338739
Blocks (Seattle)CSTF3-AS1
Human Protein Atlas [tissue]ENSG00000247151-CSTF3-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000247151
BioGRIDCSTF3-AS1
STRING (EMBL)CSTF3-AS1
ZODIACCSTF3-AS1
Ontologies - Pathways
Huge Navigator CSTF3-AS1 [HugePedia]
snp3D : Map Gene to Disease338739
BioCentury BCIQCSTF3-AS1
ClinGenCSTF3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338739
Clinical trialCSTF3-AS1
Miscellaneous
canSAR (ICR)CSTF3-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSTF3-AS1
EVEXCSTF3-AS1
GoPubMedCSTF3-AS1
iHOPCSTF3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:23:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.