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CSTF3 (cleavage stimulation factor subunit 3)

Identity

Alias_namescleavage stimulation factor, 3' pre-RNA, subunit 3, 77kD
cleavage stimulation factor, 3' pre-RNA, subunit 3
Alias_symbol (synonym)CstF-77
Other aliasCSTF-77
HGNC (Hugo) CSTF3
LocusID (NCBI) 1479
Atlas_Id 56349
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 33162977 and ends at 33183037 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CSTF3 (11p13) / CAPRIN1 (11p13)CSTF3 (11p13) / EIF3M (11p13)ECT2 (3q26.31) / CSTF3 (11p13)
GRB10 (7p12.1) / CSTF3 (11p13)JAK2 (9p24.1) / CSTF3 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSTF3   2485
Cards
Entrez_Gene (NCBI)CSTF3  1479  cleavage stimulation factor subunit 3
AliasesCSTF-77
GeneCards (Weizmann)CSTF3
Ensembl hg19 (Hinxton)ENSG00000176102 [Gene_View]  chr11:33162977-33183037 [Contig_View]  CSTF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176102 [Gene_View]  chr11:33162977-33183037 [Contig_View]  CSTF3 [Vega]
ICGC DataPortalENSG00000176102
TCGA cBioPortalCSTF3
AceView (NCBI)CSTF3
Genatlas (Paris)CSTF3
WikiGenes1479
SOURCE (Princeton)CSTF3
Genetics Home Reference (NIH)CSTF3
Genomic and cartography
GoldenPath hg19 (UCSC)CSTF3  -     chr11:33162977-33183037 -  11p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CSTF3  -     11p13   [Description]    (hg38-Dec_2013)
EnsemblCSTF3 - 11p13 [CytoView hg19]  CSTF3 - 11p13 [CytoView hg38]
Mapping of homologs : NCBICSTF3 [Mapview hg19]  CSTF3 [Mapview hg38]
OMIM600367   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001033505 NM_001033506 NM_001326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSTF3
Cluster EST : UnigeneHs.44402 [ NCBI ]
CGAP (NCI)Hs.44402
Alternative Splicing GalleryENSG00000176102
Gene ExpressionCSTF3 [ NCBI-GEO ]   CSTF3 [ EBI - ARRAY_EXPRESS ]   CSTF3 [ SEEK ]   CSTF3 [ MEM ]
Gene Expression Viewer (FireBrowse)CSTF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1479
GTEX Portal (Tissue expression)CSTF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12996   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12996  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12996
Splice isoforms : SwissVarQ12996
PhosPhoSitePlusQ12996
Domains : Interpro (EBI)HAT    Suf    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Suf (PF05843)   
Domain families : Pfam (NCBI)pfam05843   
Domain families : Smart (EMBL)HAT (SM00386)  
Conserved Domain (NCBI)CSTF3
DMDM Disease mutations1479
Blocks (Seattle)CSTF3
SuperfamilyQ12996
Human Protein AtlasENSG00000176102
Peptide AtlasQ12996
HPRD02651
IPIIPI00015195   IPI00983195   IPI00982702   IPI00382661   IPI00651748   IPI00983899   IPI00982069   
Protein Interaction databases
DIP (DOE-UCLA)Q12996
IntAct (EBI)Q12996
FunCoupENSG00000176102
BioGRIDCSTF3
STRING (EMBL)CSTF3
ZODIACCSTF3
Ontologies - Pathways
QuickGOQ12996
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  termination of RNA polymerase II transcription  mRNA polyadenylation  mRNA cleavage  mRNA 3'-end processing  poly(A) RNA binding  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  termination of RNA polymerase II transcription  mRNA polyadenylation  mRNA cleavage  mRNA 3'-end processing  poly(A) RNA binding  
Pathways : BIOCARTAPolyadenylation of mRNA [Genes]   
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkCSTF3
Atlas of Cancer Signalling NetworkCSTF3
Wikipedia pathwaysCSTF3
Orthology - Evolution
OrthoDB1479
GeneTree (enSembl)ENSG00000176102
Phylogenetic Trees/Animal Genes : TreeFamCSTF3
HOVERGENQ12996
HOGENOMQ12996
Homologs : HomoloGeneCSTF3
Homology/Alignments : Family Browser (UCSC)CSTF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSTF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSTF3
dbVarCSTF3
ClinVarCSTF3
1000_GenomesCSTF3 
Exome Variant ServerCSTF3
ExAC (Exome Aggregation Consortium)CSTF3 (select the gene name)
Genetic variants : HAPMAP1479
Genomic Variants (DGV)CSTF3 [DGVbeta]
DECIPHER (Syndromes)11:33162977-33183037  ENSG00000176102
CONAN: Copy Number AnalysisCSTF3 
Mutations
ICGC Data PortalCSTF3 
TCGA Data PortalCSTF3 
Broad Tumor PortalCSTF3
OASIS PortalCSTF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSTF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSTF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSTF3
DgiDB (Drug Gene Interaction Database)CSTF3
DoCM (Curated mutations)CSTF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSTF3 (select a term)
intoGenCSTF3
Cancer3DCSTF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600367   
Orphanet
MedgenCSTF3
Genetic Testing Registry CSTF3
NextProtQ12996 [Medical]
TSGene1479
GENETestsCSTF3
Huge Navigator CSTF3 [HugePedia]
snp3D : Map Gene to Disease1479
BioCentury BCIQCSTF3
ClinGenCSTF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1479
Chemical/Pharm GKB GenePA26987
Clinical trialCSTF3
Miscellaneous
canSAR (ICR)CSTF3 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSTF3
EVEXCSTF3
GoPubMedCSTF3
iHOPCSTF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:57:49 CEST 2017

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