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CSTL1 (cystatin like 1)

Identity

Alias_namescystatin-like 1
Alias_symbol (synonym)dJ322G13.4
CTES1
Other aliasRCET11
HGNC (Hugo) CSTL1
LocusID (NCBI) 128817
Atlas_Id 62150
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23439685 and ends at 23444930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSTL1 (20p11.21) / TNS3 (7p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CSTL1   15958
Cards
Entrez_Gene (NCBI)CSTL1  128817  cystatin like 1
AliasesCTES1; RCET11; dJ322G13.4
GeneCards (Weizmann)CSTL1
Ensembl hg19 (Hinxton)ENSG00000125823 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125823 [Gene_View]  chr20:23439685-23444930 [Contig_View]  CSTL1 [Vega]
ICGC DataPortalENSG00000125823
TCGA cBioPortalCSTL1
AceView (NCBI)CSTL1
Genatlas (Paris)CSTL1
WikiGenes128817
SOURCE (Princeton)CSTL1
Genetics Home Reference (NIH)CSTL1
Genomic and cartography
GoldenPath hg38 (UCSC)CSTL1  -     chr20:23439685-23444930 +  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSTL1  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCSTL1 - 20p11.21 [CytoView hg19]  CSTL1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICSTL1 [Mapview hg19]  CSTL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY707749 BC117396 BC144010 BC144013 BI560738
RefSeq transcript (Entrez)NM_138283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSTL1
Cluster EST : UnigeneHs.352134 [ NCBI ]
CGAP (NCI)Hs.352134
Alternative Splicing GalleryENSG00000125823
Gene ExpressionCSTL1 [ NCBI-GEO ]   CSTL1 [ EBI - ARRAY_EXPRESS ]   CSTL1 [ SEEK ]   CSTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128817
GTEX Portal (Tissue expression)CSTL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H114   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H114  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H114
Splice isoforms : SwissVarQ9H114
PhosPhoSitePlusQ9H114
Domains : Interpro (EBI)Cystatin    Cystatin_dom   
Domain families : Pfam (Sanger)Cystatin (PF00031)   
Domain families : Pfam (NCBI)pfam00031   
Domain families : Smart (EMBL)CY (SM00043)  
Conserved Domain (NCBI)CSTL1
DMDM Disease mutations128817
Blocks (Seattle)CSTL1
SuperfamilyQ9H114
Human Protein AtlasENSG00000125823
Peptide AtlasQ9H114
HPRD16770
IPIIPI00014604   IPI01012168   
Protein Interaction databases
DIP (DOE-UCLA)Q9H114
IntAct (EBI)Q9H114
FunCoupENSG00000125823
BioGRIDCSTL1
STRING (EMBL)CSTL1
ZODIACCSTL1
Ontologies - Pathways
QuickGOQ9H114
Ontology : AmiGOcysteine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
Ontology : EGO-EBIcysteine-type endopeptidase inhibitor activity  extracellular region  negative regulation of endopeptidase activity  
NDEx NetworkCSTL1
Atlas of Cancer Signalling NetworkCSTL1
Wikipedia pathwaysCSTL1
Orthology - Evolution
OrthoDB128817
GeneTree (enSembl)ENSG00000125823
Phylogenetic Trees/Animal Genes : TreeFamCSTL1
HOVERGENQ9H114
HOGENOMQ9H114
Homologs : HomoloGeneCSTL1
Homology/Alignments : Family Browser (UCSC)CSTL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSTL1
dbVarCSTL1
ClinVarCSTL1
1000_GenomesCSTL1 
Exome Variant ServerCSTL1
ExAC (Exome Aggregation Consortium)CSTL1 (select the gene name)
Genetic variants : HAPMAP128817
Genomic Variants (DGV)CSTL1 [DGVbeta]
DECIPHERCSTL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSTL1 
Mutations
ICGC Data PortalCSTL1 
TCGA Data PortalCSTL1 
Broad Tumor PortalCSTL1
OASIS PortalCSTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCSTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSTL1
DgiDB (Drug Gene Interaction Database)CSTL1
DoCM (Curated mutations)CSTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSTL1 (select a term)
intoGenCSTL1
Cancer3DCSTL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCSTL1
Genetic Testing Registry CSTL1
NextProtQ9H114 [Medical]
TSGene128817
GENETestsCSTL1
Target ValidationCSTL1
Huge Navigator CSTL1 [HugePedia]
snp3D : Map Gene to Disease128817
BioCentury BCIQCSTL1
ClinGenCSTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128817
Chemical/Pharm GKB GenePA26988
Clinical trialCSTL1
Miscellaneous
canSAR (ICR)CSTL1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSTL1
EVEXCSTL1
GoPubMedCSTL1
iHOPCSTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:45 CEST 2017

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