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CT45A1 (cancer/testis antigen family 45 member A1)

Identity

Alias_symbol (synonym)CT45-1
CT45.1
Other aliasCT45
HGNC (Hugo) CT45A1
LocusID (NCBI) 541466
Atlas_Id 50804
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135713453 and ends at 135723246 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT45A1   33267
Cards
Entrez_Gene (NCBI)CT45A1  541466  cancer/testis antigen family 45 member A1
AliasesCT45; CT45-1; CT45.1
GeneCards (Weizmann)CT45A1
Ensembl hg19 (Hinxton)ENSG00000268940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268940 [Gene_View]  chrX:135713453-135723246 [Contig_View]  CT45A1 [Vega]
ICGC DataPortalENSG00000268940
TCGA cBioPortalCT45A1
AceView (NCBI)CT45A1
Genatlas (Paris)CT45A1
WikiGenes541466
SOURCE (Princeton)CT45A1
Genetics Home Reference (NIH)CT45A1
Genomic and cartography
GoldenPath hg38 (UCSC)CT45A1  -     chrX:135713453-135723246 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT45A1  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT45A1 - Xq26.3 [CytoView hg19]  CT45A1 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A1 [Mapview hg19]  CT45A1 [Mapview hg38]
OMIM300648   
Gene and transcription
Genbank (Entrez)AA757285 AY743709 BC140913
RefSeq transcript (Entrez)NM_001017417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT45A1
Cluster EST : UnigeneHs.535080 [ NCBI ]
CGAP (NCI)Hs.535080
Alternative Splicing GalleryENSG00000268940
Gene ExpressionCT45A1 [ NCBI-GEO ]   CT45A1 [ EBI - ARRAY_EXPRESS ]   CT45A1 [ SEEK ]   CT45A1 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)541466
GTEX Portal (Tissue expression)CT45A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYN5
Splice isoforms : SwissVarQ5HYN5
PhosPhoSitePlusQ5HYN5
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A1
DMDM Disease mutations541466
Blocks (Seattle)CT45A1
SuperfamilyQ5HYN5
Human Protein Atlas
Peptide AtlasQ5HYN5
HPRD18673
IPIIPI00869227   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYN5
IntAct (EBI)Q5HYN5
FunCoupENSG00000268940
BioGRIDCT45A1
STRING (EMBL)CT45A1
ZODIACCT45A1
Ontologies - Pathways
QuickGOQ5HYN5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A1
Atlas of Cancer Signalling NetworkCT45A1
Wikipedia pathwaysCT45A1
Orthology - Evolution
OrthoDB541466
GeneTree (enSembl)ENSG00000268940
Phylogenetic Trees/Animal Genes : TreeFamCT45A1
HOVERGENQ5HYN5
HOGENOMQ5HYN5
Homologs : HomoloGeneCT45A1
Homology/Alignments : Family Browser (UCSC)CT45A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A1
dbVarCT45A1
ClinVarCT45A1
1000_GenomesCT45A1 
Exome Variant ServerCT45A1
ExAC (Exome Aggregation Consortium)CT45A1 (select the gene name)
Genetic variants : HAPMAP541466
Genomic Variants (DGV)CT45A1 [DGVbeta]
DECIPHERCT45A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT45A1 
Mutations
ICGC Data PortalCT45A1 
TCGA Data PortalCT45A1 
Broad Tumor PortalCT45A1
OASIS PortalCT45A1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT45A1
DgiDB (Drug Gene Interaction Database)CT45A1
DoCM (Curated mutations)CT45A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A1 (select a term)
intoGenCT45A1
Cancer3DCT45A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300648   
Orphanet
MedgenCT45A1
Genetic Testing Registry CT45A1
NextProtQ5HYN5 [Medical]
TSGene541466
GENETestsCT45A1
Target ValidationCT45A1
Huge Navigator CT45A1 [HugePedia]
snp3D : Map Gene to Disease541466
BioCentury BCIQCT45A1
ClinGenCT45A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD541466
Chemical/Pharm GKB GenePA164718185
Clinical trialCT45A1
Miscellaneous
canSAR (ICR)CT45A1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A1
EVEXCT45A1
GoPubMedCT45A1
iHOPCT45A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:03 CEST 2017

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