Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT45A10 (cancer/testis antigen family 45 member A10)

Identity

Other alias-
HGNC (Hugo) CT45A10
LocusID (NCBI) 102723631
Atlas_Id 54939
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135880752 and ends at 135888993 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT45A10   51263
Cards
Entrez_Gene (NCBI)CT45A10  102723631  cancer/testis antigen family 45 member A10
Aliases
GeneCards (Weizmann)CT45A10
Ensembl hg19 (Hinxton)ENSG00000269586 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269586 [Gene_View]  chrX:135880752-135888993 [Contig_View]  CT45A10 [Vega]
ICGC DataPortalENSG00000269586
TCGA cBioPortalCT45A10
AceView (NCBI)CT45A10
Genatlas (Paris)CT45A10
WikiGenes102723631
SOURCE (Princeton)CT45A10
Genetics Home Reference (NIH)CT45A10
Genomic and cartography
GoldenPath hg38 (UCSC)CT45A10  -     chrX:135880752-135888993 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT45A10  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT45A10 - Xq26.3 [CytoView hg19]  CT45A10 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A10 [Mapview hg19]  CT45A10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292207 AY743713 BC070138 BC144429 BC144430
RefSeq transcript (Entrez)NM_001291527 NM_001291528 NM_001291529 NM_001291530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT45A10
Cluster EST : UnigeneHs.535081 [ NCBI ]
CGAP (NCI)Hs.535081
Alternative Splicing GalleryENSG00000269586
Gene ExpressionCT45A10 [ NCBI-GEO ]   CT45A10 [ EBI - ARRAY_EXPRESS ]   CT45A10 [ SEEK ]   CT45A10 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723631
GTEX Portal (Tissue expression)CT45A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMU9
Splice isoforms : SwissVarP0DMU9
PhosPhoSitePlusP0DMU9
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A10
DMDM Disease mutations102723631
Blocks (Seattle)CT45A10
SuperfamilyP0DMU9
Human Protein AtlasENSG00000269586
Peptide AtlasP0DMU9
Protein Interaction databases
DIP (DOE-UCLA)P0DMU9
IntAct (EBI)P0DMU9
FunCoupENSG00000269586
BioGRIDCT45A10
STRING (EMBL)CT45A10
ZODIACCT45A10
Ontologies - Pathways
QuickGOP0DMU9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A10
Atlas of Cancer Signalling NetworkCT45A10
Wikipedia pathwaysCT45A10
Orthology - Evolution
OrthoDB102723631
GeneTree (enSembl)ENSG00000269586
Phylogenetic Trees/Animal Genes : TreeFamCT45A10
HOVERGENP0DMU9
HOGENOMP0DMU9
Homologs : HomoloGeneCT45A10
Homology/Alignments : Family Browser (UCSC)CT45A10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A10
dbVarCT45A10
ClinVarCT45A10
1000_GenomesCT45A10 
Exome Variant ServerCT45A10
ExAC (Exome Aggregation Consortium)CT45A10 (select the gene name)
Genetic variants : HAPMAP102723631
Genomic Variants (DGV)CT45A10 [DGVbeta]
DECIPHERCT45A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT45A10 
Mutations
ICGC Data PortalCT45A10 
TCGA Data PortalCT45A10 
Broad Tumor PortalCT45A10
OASIS PortalCT45A10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A10
BioMutasearch CT45A10
DgiDB (Drug Gene Interaction Database)CT45A10
DoCM (Curated mutations)CT45A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A10 (select a term)
intoGenCT45A10
Cancer3DCT45A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCT45A10
Genetic Testing Registry CT45A10
NextProtP0DMU9 [Medical]
TSGene102723631
GENETestsCT45A10
Target ValidationCT45A10
Huge Navigator CT45A10 [HugePedia]
snp3D : Map Gene to Disease102723631
BioCentury BCIQCT45A10
ClinGenCT45A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723631
Chemical/Pharm GKB GenePA166123682
Clinical trialCT45A10
Miscellaneous
canSAR (ICR)CT45A10 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A10
EVEXCT45A10
GoPubMedCT45A10
iHOPCT45A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:58:47 CEST 2017

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