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CT45A2 (cancer/testis antigen family 45 member A2)

Identity

Alias_symbol (synonym)CT45-2
CT45.2
Other alias
HGNC (Hugo) CT45A2
LocusID (NCBI) 728911
Atlas_Id 50812
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135811980 and ends at 135820012 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2A (11q23.3) / CT45A2 (Xq26.3)KMT2A 11q23.3 / CT45A2 Xq26.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;11)(q26;q23)::ins(X;11)(q26;q23q23)


External links

Nomenclature
HGNC (Hugo)CT45A2   28400
Cards
Entrez_Gene (NCBI)CT45A2  728911  cancer/testis antigen family 45 member A2
AliasesCT45-2; CT45.2
GeneCards (Weizmann)CT45A2
Ensembl hg19 (Hinxton)ENSG00000271449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271449 [Gene_View]  chrX:135811980-135820012 [Contig_View]  CT45A2 [Vega]
ICGC DataPortalENSG00000271449
TCGA cBioPortalCT45A2
AceView (NCBI)CT45A2
Genatlas (Paris)CT45A2
WikiGenes728911
SOURCE (Princeton)CT45A2
Genetics Home Reference (NIH)CT45A2
Genomic and cartography
GoldenPath hg38 (UCSC)CT45A2  -     chrX:135811980-135820012 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT45A2  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT45A2 - Xq26.3 [CytoView hg19]  CT45A2 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A2 [Mapview hg19]  CT45A2 [Mapview hg38]
OMIM300793   
Gene and transcription
Genbank (Entrez)AY743710 BQ020473
RefSeq transcript (Entrez)NM_152582
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT45A2
Cluster EST : UnigeneHs.632281 [ NCBI ]
CGAP (NCI)Hs.632281
Alternative Splicing GalleryENSG00000271449
Gene ExpressionCT45A2 [ NCBI-GEO ]   CT45A2 [ EBI - ARRAY_EXPRESS ]   CT45A2 [ SEEK ]   CT45A2 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728911
GTEX Portal (Tissue expression)CT45A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5DJT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5DJT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5DJT8
Splice isoforms : SwissVarQ5DJT8
PhosPhoSitePlusQ5DJT8
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A2
DMDM Disease mutations728911
Blocks (Seattle)CT45A2
SuperfamilyQ5DJT8
Human Protein AtlasENSG00000271449
Peptide AtlasQ5DJT8
HPRD06644
IPIIPI00556278   
Protein Interaction databases
DIP (DOE-UCLA)Q5DJT8
IntAct (EBI)Q5DJT8
FunCoupENSG00000271449
BioGRIDCT45A2
STRING (EMBL)CT45A2
ZODIACCT45A2
Ontologies - Pathways
QuickGOQ5DJT8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A2
Atlas of Cancer Signalling NetworkCT45A2
Wikipedia pathwaysCT45A2
Orthology - Evolution
OrthoDB728911
GeneTree (enSembl)ENSG00000271449
Phylogenetic Trees/Animal Genes : TreeFamCT45A2
HOVERGENQ5DJT8
HOGENOMQ5DJT8
Homologs : HomoloGeneCT45A2
Homology/Alignments : Family Browser (UCSC)CT45A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A2
dbVarCT45A2
ClinVarCT45A2
1000_GenomesCT45A2 
Exome Variant ServerCT45A2
ExAC (Exome Aggregation Consortium)CT45A2 (select the gene name)
Genetic variants : HAPMAP728911
Genomic Variants (DGV)CT45A2 [DGVbeta]
DECIPHERCT45A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT45A2 
Mutations
ICGC Data PortalCT45A2 
TCGA Data PortalCT45A2 
Broad Tumor PortalCT45A2
OASIS PortalCT45A2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CT45A2
DgiDB (Drug Gene Interaction Database)CT45A2
DoCM (Curated mutations)CT45A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A2 (select a term)
intoGenCT45A2
Cancer3DCT45A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300793   
Orphanet
MedgenCT45A2
Genetic Testing Registry CT45A2
NextProtQ5DJT8 [Medical]
TSGene728911
GENETestsCT45A2
Target ValidationCT45A2
Huge Navigator CT45A2 [HugePedia]
snp3D : Map Gene to Disease728911
BioCentury BCIQCT45A2
ClinGenCT45A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728911
Chemical/Pharm GKB GenePA164718186
Clinical trialCT45A2
Miscellaneous
canSAR (ICR)CT45A2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A2
EVEXCT45A2
GoPubMedCT45A2
iHOPCT45A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:51 CEST 2017

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