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CT45A3 (cancer/testis antigen family 45 member A3)

Identity

Alias_namesCT45A4
cancer/testis antigen family 45
Alias_symbol (synonym)CT45-3
CT45.3
CT45-4
CT45.4
Other alias
HGNC (Hugo) CT45A3
LocusID (NCBI) 441519
Atlas_Id 50822
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135760159 and ends at 135768191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;11)(q26;q23) KMT2A/CT45A3


External links

Nomenclature
HGNC (Hugo)CT45A3   33268
Cards
Entrez_Gene (NCBI)CT45A3  441519  cancer/testis antigen family 45 member A3
AliasesCT45-3; CT45-4; CT45.3; CT45.4; 
CT45A4
GeneCards (Weizmann)CT45A3
Ensembl hg19 (Hinxton)ENSG00000269096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269096 [Gene_View]  ENSG00000269096 [Sequence]  chrX:135760159-135768191 [Contig_View]  CT45A3 [Vega]
ICGC DataPortalENSG00000269096
TCGA cBioPortalCT45A3
AceView (NCBI)CT45A3
Genatlas (Paris)CT45A3
WikiGenes441519
SOURCE (Princeton)CT45A3
Genetics Home Reference (NIH)CT45A3
Genomic and cartography
GoldenPath hg38 (UCSC)CT45A3  -     chrX:135760159-135768191 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT45A3  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT45A3 - Xq26.3 [CytoView hg19]  CT45A3 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A3 [Mapview hg19]  CT45A3 [Mapview hg38]
OMIM300794   
Gene and transcription
Genbank (Entrez)AY743711
RefSeq transcript (Entrez)NM_001017435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT45A3
Cluster EST : UnigeneHs.535080 [ NCBI ]
CGAP (NCI)Hs.535080
Alternative Splicing GalleryENSG00000269096
Gene ExpressionCT45A3 [ NCBI-GEO ]   CT45A3 [ EBI - ARRAY_EXPRESS ]   CT45A3 [ SEEK ]   CT45A3 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441519
GTEX Portal (Tissue expression)CT45A3
Human Protein AtlasENSG00000269096-CT45A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHU0
Splice isoforms : SwissVarQ8NHU0
PhosPhoSitePlusQ8NHU0
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A3
DMDM Disease mutations441519
Blocks (Seattle)CT45A3
SuperfamilyQ8NHU0
Human Protein Atlas [tissue]ENSG00000269096-CT45A3 [tissue]
Peptide AtlasQ8NHU0
HPRD18653
IPIIPI00643831   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHU0
IntAct (EBI)Q8NHU0
FunCoupENSG00000269096
BioGRIDCT45A3
STRING (EMBL)CT45A3
ZODIACCT45A3
Ontologies - Pathways
QuickGOQ8NHU0
Ontology : AmiGOprotein binding  integrator complex  snRNA 3'-end processing  
Ontology : EGO-EBIprotein binding  integrator complex  snRNA 3'-end processing  
NDEx NetworkCT45A3
Atlas of Cancer Signalling NetworkCT45A3
Wikipedia pathwaysCT45A3
Orthology - Evolution
OrthoDB441519
GeneTree (enSembl)ENSG00000269096
Phylogenetic Trees/Animal Genes : TreeFamCT45A3
HOVERGENQ8NHU0
HOGENOMQ8NHU0
Homologs : HomoloGeneCT45A3
Homology/Alignments : Family Browser (UCSC)CT45A3
Gene fusions - Rearrangements
Fusion : QuiverCT45A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A3
dbVarCT45A3
ClinVarCT45A3
1000_GenomesCT45A3 
Exome Variant ServerCT45A3
ExAC (Exome Aggregation Consortium)ENSG00000269096
GNOMAD BrowserENSG00000269096
Varsome BrowserCT45A3
Genetic variants : HAPMAP441519
Genomic Variants (DGV)CT45A3 [DGVbeta]
DECIPHERCT45A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT45A3 
Mutations
ICGC Data PortalCT45A3 
TCGA Data PortalCT45A3 
Broad Tumor PortalCT45A3
OASIS PortalCT45A3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT45A3
DgiDB (Drug Gene Interaction Database)CT45A3
DoCM (Curated mutations)CT45A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A3 (select a term)
intoGenCT45A3
Cancer3DCT45A3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300794   
Orphanet
DisGeNETCT45A3
MedgenCT45A3
Genetic Testing Registry CT45A3
NextProtQ8NHU0 [Medical]
TSGene441519
GENETestsCT45A3
Target ValidationCT45A3
Huge Navigator CT45A3 [HugePedia]
snp3D : Map Gene to Disease441519
BioCentury BCIQCT45A3
ClinGenCT45A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441519
Chemical/Pharm GKB GenePA164718201
Clinical trialCT45A3
Miscellaneous
canSAR (ICR)CT45A3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A3
EVEXCT45A3
GoPubMedCT45A3
iHOPCT45A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:00:36 CET 2018

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