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CT45A5 (cancer/testis antigen family 45 member A5)

Identity

Alias_symbol (synonym)CT45-5
CT45.5
Other aliasCT455
HGNC (Hugo) CT45A5
LocusID (NCBI) 441521
Atlas_Id 50801
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135777130 and ends at 135785475 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT45A5   33270
Cards
Entrez_Gene (NCBI)CT45A5  441521  cancer/testis antigen family 45 member A5
AliasesCT45.5; CT455
GeneCards (Weizmann)CT45A5
Ensembl hg19 (Hinxton)ENSG00000228836 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228836 [Gene_View]  chrX:135777130-135785475 [Contig_View]  CT45A5 [Vega]
ICGC DataPortalENSG00000228836
TCGA cBioPortalCT45A5
AceView (NCBI)CT45A5
Genatlas (Paris)CT45A5
WikiGenes441521
SOURCE (Princeton)CT45A5
Genetics Home Reference (NIH)CT45A5
Genomic and cartography
GoldenPath hg38 (UCSC)CT45A5  -     chrX:135777130-135785475 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT45A5  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT45A5 - Xq26.3 [CytoView hg19]  CT45A5 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A5 [Mapview hg19]  CT45A5 [Mapview hg38]
OMIM300796   
Gene and transcription
Genbank (Entrez)BC028711 BC140735 BC140926 BC144437 HQ447520
RefSeq transcript (Entrez)NM_001007551 NM_001172288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT45A5
Cluster EST : UnigeneHs.535080 [ NCBI ]
CGAP (NCI)Hs.535080
Alternative Splicing GalleryENSG00000228836
Gene ExpressionCT45A5 [ NCBI-GEO ]   CT45A5 [ EBI - ARRAY_EXPRESS ]   CT45A5 [ SEEK ]   CT45A5 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441521
GTEX Portal (Tissue expression)CT45A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMU8
Splice isoforms : SwissVarP0DMU8
PhosPhoSitePlusP0DMU8
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A5
DMDM Disease mutations441521
Blocks (Seattle)CT45A5
SuperfamilyP0DMU8
Human Protein AtlasENSG00000228836
Peptide AtlasP0DMU8
HPRD17573
IPIIPI00431697   
Protein Interaction databases
DIP (DOE-UCLA)P0DMU8
IntAct (EBI)P0DMU8
FunCoupENSG00000228836
BioGRIDCT45A5
STRING (EMBL)CT45A5
ZODIACCT45A5
Ontologies - Pathways
QuickGOP0DMU8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A5
Atlas of Cancer Signalling NetworkCT45A5
Wikipedia pathwaysCT45A5
Orthology - Evolution
OrthoDB441521
GeneTree (enSembl)ENSG00000228836
Phylogenetic Trees/Animal Genes : TreeFamCT45A5
HOVERGENP0DMU8
HOGENOMP0DMU8
Homologs : HomoloGeneCT45A5
Homology/Alignments : Family Browser (UCSC)CT45A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A5
dbVarCT45A5
ClinVarCT45A5
1000_GenomesCT45A5 
Exome Variant ServerCT45A5
ExAC (Exome Aggregation Consortium)CT45A5 (select the gene name)
Genetic variants : HAPMAP441521
Genomic Variants (DGV)CT45A5 [DGVbeta]
DECIPHERCT45A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT45A5 
Mutations
ICGC Data PortalCT45A5 
TCGA Data PortalCT45A5 
Broad Tumor PortalCT45A5
OASIS PortalCT45A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT45A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT45A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CT45A5
DgiDB (Drug Gene Interaction Database)CT45A5
DoCM (Curated mutations)CT45A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A5 (select a term)
intoGenCT45A5
Cancer3DCT45A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300796   
Orphanet
MedgenCT45A5
Genetic Testing Registry CT45A5
NextProtP0DMU8 [Medical]
TSGene441521
GENETestsCT45A5
Target ValidationCT45A5
Huge Navigator CT45A5 [HugePedia]
snp3D : Map Gene to Disease441521
BioCentury BCIQCT45A5
ClinGenCT45A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441521
Chemical/Pharm GKB GenePA164718203
Clinical trialCT45A5
Miscellaneous
canSAR (ICR)CT45A5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A5
EVEXCT45A5
GoPubMedCT45A5
iHOPCT45A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:29:51 CEST 2017

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