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CT45A6 (cancer/testis antigen family 45 member A6)

Identity

Alias_symbol (synonym)CT45-6
CT45.6
Other alias
HGNC (Hugo) CT45A6
LocusID (NCBI) 541465
Atlas_Id 50796
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135777443 and ends at 135785475 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT45A6   33271
Cards
Entrez_Gene (NCBI)CT45A6  541465  cancer/testis antigen family 45 member A6
AliasesCT45-6; CT45.6
GeneCards (Weizmann)CT45A6
Ensembl hg19 (Hinxton)ENSG00000278289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278289 [Gene_View]  chrX:135777443-135785475 [Contig_View]  CT45A6 [Vega]
ICGC DataPortalENSG00000278289
TCGA cBioPortalCT45A6
AceView (NCBI)CT45A6
Genatlas (Paris)CT45A6
WikiGenes541465
SOURCE (Princeton)CT45A6
Genetics Home Reference (NIH)CT45A6
Genomic and cartography
GoldenPath hg38 (UCSC)CT45A6  -     chrX:135777443-135785475 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT45A6  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblCT45A6 - Xq26.3 [CytoView hg19]  CT45A6 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A6 [Mapview hg19]  CT45A6 [Mapview hg38]
OMIM300797   
Gene and transcription
Genbank (Entrez)AY743714 BC156861
RefSeq transcript (Entrez)NM_001017438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT45A6
Cluster EST : UnigeneHs.676560 [ NCBI ]
CGAP (NCI)Hs.676560
Alternative Splicing GalleryENSG00000278289
Gene ExpressionCT45A6 [ NCBI-GEO ]   CT45A6 [ EBI - ARRAY_EXPRESS ]   CT45A6 [ SEEK ]   CT45A6 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)541465
GTEX Portal (Tissue expression)CT45A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMU7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMU7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMU7
Splice isoforms : SwissVarP0DMU7
PhosPhoSitePlusP0DMU7
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A6
DMDM Disease mutations541465
Blocks (Seattle)CT45A6
SuperfamilyP0DMU7
Human Protein AtlasENSG00000278289
Peptide AtlasP0DMU7
HPRD18672
Protein Interaction databases
DIP (DOE-UCLA)P0DMU7
IntAct (EBI)P0DMU7
FunCoupENSG00000278289
BioGRIDCT45A6
STRING (EMBL)CT45A6
ZODIACCT45A6
Ontologies - Pathways
QuickGOP0DMU7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A6
Atlas of Cancer Signalling NetworkCT45A6
Wikipedia pathwaysCT45A6
Orthology - Evolution
OrthoDB541465
GeneTree (enSembl)ENSG00000278289
Phylogenetic Trees/Animal Genes : TreeFamCT45A6
HOVERGENP0DMU7
HOGENOMP0DMU7
Homologs : HomoloGeneCT45A6
Homology/Alignments : Family Browser (UCSC)CT45A6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A6
dbVarCT45A6
ClinVarCT45A6
1000_GenomesCT45A6 
Exome Variant ServerCT45A6
ExAC (Exome Aggregation Consortium)CT45A6 (select the gene name)
Genetic variants : HAPMAP541465
Genomic Variants (DGV)CT45A6 [DGVbeta]
DECIPHERCT45A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT45A6 
Mutations
ICGC Data PortalCT45A6 
TCGA Data PortalCT45A6 
Broad Tumor PortalCT45A6
OASIS PortalCT45A6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT45A6
DgiDB (Drug Gene Interaction Database)CT45A6
DoCM (Curated mutations)CT45A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A6 (select a term)
intoGenCT45A6
Cancer3DCT45A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300797   
Orphanet
MedgenCT45A6
Genetic Testing Registry CT45A6
NextProtP0DMU7 [Medical]
TSGene541465
GENETestsCT45A6
Target ValidationCT45A6
Huge Navigator CT45A6 [HugePedia]
snp3D : Map Gene to Disease541465
BioCentury BCIQCT45A6
ClinGenCT45A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD541465
Chemical/Pharm GKB GenePA164718204
Clinical trialCT45A6
Miscellaneous
canSAR (ICR)CT45A6 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A6
EVEXCT45A6
GoPubMedCT45A6
iHOPCT45A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:04 CEST 2017

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