Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT45A7 (cancer/testis antigen family 45, member A7)

Identity

Other alias-
HGNC (Hugo) CT45A7
LocusID (NCBI) 101060211
Atlas_Id 54924
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134847386 and ends at 134856984 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT45A7   51260
Cards
Entrez_Gene (NCBI)CT45A7  101060211  cancer/testis antigen family 45, member A7
Aliases
GeneCards (Weizmann)CT45A7
Ensembl hg19 (Hinxton)ENSG00000273696 [Gene_View]  chrX:134847386-134856984 [Contig_View]  CT45A7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000273696 [Gene_View]  chrX:134847386-134856984 [Contig_View]  CT45A7 [Vega]
ICGC DataPortalENSG00000273696
TCGA cBioPortalCT45A7
AceView (NCBI)CT45A7
Genatlas (Paris)CT45A7
WikiGenes101060211
SOURCE (Princeton)CT45A7
Genetics Home Reference (NIH)CT45A7
Genomic and cartography
GoldenPath hg19 (UCSC)CT45A7  -     chrX:134847386-134856984 +  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CT45A7  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblCT45A7 - Xq26.3 [CytoView hg19]  CT45A7 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A7 [Mapview hg19]  CT45A7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU540102
RefSeq transcript (Entrez)NM_001291543
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)CT45A7
Cluster EST : UnigeneHs.535080 [ NCBI ]
CGAP (NCI)Hs.535080
Alternative Splicing GalleryENSG00000273696
Gene ExpressionCT45A7 [ NCBI-GEO ]   CT45A7 [ EBI - ARRAY_EXPRESS ]   CT45A7 [ SEEK ]   CT45A7 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101060211
GTEX Portal (Tissue expression)CT45A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMV0
Splice isoforms : SwissVarP0DMV0
PhosPhoSitePlusP0DMV0
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A7
DMDM Disease mutations101060211
Blocks (Seattle)CT45A7
SuperfamilyP0DMV0
Human Protein AtlasENSG00000273696
Peptide AtlasP0DMV0
Protein Interaction databases
DIP (DOE-UCLA)P0DMV0
IntAct (EBI)P0DMV0
FunCoupENSG00000273696
BioGRIDCT45A7
STRING (EMBL)CT45A7
ZODIACCT45A7
Ontologies - Pathways
QuickGOP0DMV0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A7
Atlas of Cancer Signalling NetworkCT45A7
Wikipedia pathwaysCT45A7
Orthology - Evolution
OrthoDB101060211
GeneTree (enSembl)ENSG00000273696
Phylogenetic Trees/Animal Genes : TreeFamCT45A7
HOVERGENP0DMV0
HOGENOMP0DMV0
Homologs : HomoloGeneCT45A7
Homology/Alignments : Family Browser (UCSC)CT45A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A7
dbVarCT45A7
ClinVarCT45A7
1000_GenomesCT45A7 
Exome Variant ServerCT45A7
ExAC (Exome Aggregation Consortium)CT45A7 (select the gene name)
Genetic variants : HAPMAP101060211
Genomic Variants (DGV)CT45A7 [DGVbeta]
DECIPHER (Syndromes)X:134847386-134856984  ENSG00000273696
CONAN: Copy Number AnalysisCT45A7 
Mutations
ICGC Data PortalCT45A7 
TCGA Data PortalCT45A7 
Broad Tumor PortalCT45A7
OASIS PortalCT45A7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A7
BioMutasearch CT45A7
DgiDB (Drug Gene Interaction Database)CT45A7
DoCM (Curated mutations)CT45A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A7 (select a term)
intoGenCT45A7
Cancer3DCT45A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCT45A7
Genetic Testing Registry CT45A7
NextProtP0DMV0 [Medical]
TSGene101060211
GENETestsCT45A7
Huge Navigator CT45A7 [HugePedia]
snp3D : Map Gene to Disease101060211
BioCentury BCIQCT45A7
ClinGenCT45A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060211
Clinical trialCT45A7
Miscellaneous
canSAR (ICR)CT45A7 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A7
EVEXCT45A7
GoPubMedCT45A7
iHOPCT45A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:01 CET 2017

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