Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT45A9 (cancer/testis antigen family 45, member A9)

Identity

Other alias-
HGNC (Hugo) CT45A9
LocusID (NCBI) 102723680
Atlas_Id 54932
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134866214 and ends at 134874249 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT45A9   51262
Cards
Entrez_Gene (NCBI)CT45A9  102723680  cancer/testis antigen family 45, member A9
Aliases
GeneCards (Weizmann)CT45A9
Ensembl hg19 (Hinxton)ENSG00000270946 [Gene_View]  chrX:134866214-134874249 [Contig_View]  CT45A9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000270946 [Gene_View]  chrX:134866214-134874249 [Contig_View]  CT45A9 [Vega]
ICGC DataPortalENSG00000270946
TCGA cBioPortalCT45A9
AceView (NCBI)CT45A9
Genatlas (Paris)CT45A9
WikiGenes102723680
SOURCE (Princeton)CT45A9
Genetics Home Reference (NIH)CT45A9
Genomic and cartography
GoldenPath hg19 (UCSC)CT45A9  -     chrX:134866214-134874249 +  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CT45A9  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblCT45A9 - Xq26.3 [CytoView hg19]  CT45A9 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBICT45A9 [Mapview hg19]  CT45A9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA419457
RefSeq transcript (Entrez)NM_001291540 NM_001321271
RefSeq genomic (Entrez)NC_000023 NT_011786
Consensus coding sequences : CCDS (NCBI)CT45A9
Cluster EST : UnigeneHs.632281 [ NCBI ]
CGAP (NCI)Hs.632281
Alternative Splicing GalleryENSG00000270946
Gene ExpressionCT45A9 [ NCBI-GEO ]   CT45A9 [ EBI - ARRAY_EXPRESS ]   CT45A9 [ SEEK ]   CT45A9 [ MEM ]
Gene Expression Viewer (FireBrowse)CT45A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723680
GTEX Portal (Tissue expression)CT45A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMV2
Splice isoforms : SwissVarP0DMV2
PhosPhoSitePlusP0DMV2
Domains : Interpro (EBI)INT_SG_DDX_CT_C   
Domain families : Pfam (Sanger)INT_SG_DDX_CT_C (PF15300)   
Domain families : Pfam (NCBI)pfam15300   
Conserved Domain (NCBI)CT45A9
DMDM Disease mutations102723680
Blocks (Seattle)CT45A9
SuperfamilyP0DMV2
Human Protein AtlasENSG00000270946
Peptide AtlasP0DMV2
Protein Interaction databases
DIP (DOE-UCLA)P0DMV2
IntAct (EBI)P0DMV2
FunCoupENSG00000270946
BioGRIDCT45A9
STRING (EMBL)CT45A9
ZODIACCT45A9
Ontologies - Pathways
QuickGOP0DMV2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT45A9
Atlas of Cancer Signalling NetworkCT45A9
Wikipedia pathwaysCT45A9
Orthology - Evolution
OrthoDB102723680
GeneTree (enSembl)ENSG00000270946
Phylogenetic Trees/Animal Genes : TreeFamCT45A9
HOVERGENP0DMV2
HOGENOMP0DMV2
Homologs : HomoloGeneCT45A9
Homology/Alignments : Family Browser (UCSC)CT45A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT45A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT45A9
dbVarCT45A9
ClinVarCT45A9
1000_GenomesCT45A9 
Exome Variant ServerCT45A9
ExAC (Exome Aggregation Consortium)CT45A9 (select the gene name)
Genetic variants : HAPMAP102723680
Genomic Variants (DGV)CT45A9 [DGVbeta]
DECIPHER (Syndromes)X:134866214-134874249  ENSG00000270946
CONAN: Copy Number AnalysisCT45A9 
Mutations
ICGC Data PortalCT45A9 
TCGA Data PortalCT45A9 
Broad Tumor PortalCT45A9
OASIS PortalCT45A9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT45A9
BioMutasearch CT45A9
DgiDB (Drug Gene Interaction Database)CT45A9
DoCM (Curated mutations)CT45A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT45A9 (select a term)
intoGenCT45A9
Cancer3DCT45A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCT45A9
Genetic Testing Registry CT45A9
NextProtP0DMV2 [Medical]
TSGene102723680
GENETestsCT45A9
Huge Navigator CT45A9 [HugePedia]
snp3D : Map Gene to Disease102723680
BioCentury BCIQCT45A9
ClinGenCT45A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723680
Clinical trialCT45A9
Miscellaneous
canSAR (ICR)CT45A9 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT45A9
EVEXCT45A9
GoPubMedCT45A9
iHOPCT45A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:02:01 CET 2017

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