Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CT47A1 (cancer/testis antigen family 47, member A1)

Identity

Alias_namesmember 1
Alias_symbol (synonym)CT47.1
Other alias
HGNC (Hugo) CT47A1
LocusID (NCBI) 728096
Atlas_Id 50794
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120011345 and ends at 120066151 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A1   33282
Cards
Entrez_Gene (NCBI)CT47A1  728096  cancer/testis antigen family 47, member A1
AliasesCT47.1
GeneCards (Weizmann)CT47A1
Ensembl hg19 (Hinxton)ENSG00000236371 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000236371 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A1 [Vega]
ICGC DataPortalENSG00000236371
TCGA cBioPortalCT47A1
AceView (NCBI)CT47A1
Genatlas (Paris)CT47A1
WikiGenes728096
SOURCE (Princeton)CT47A1
Genetics Home Reference (NIH)CT47A1
Genomic and cartography
GoldenPath hg19 (UCSC)CT47A1  -     chrX:120011345-120066151 -  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CT47A1  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblCT47A1 - Xq24 [CytoView hg19]  CT47A1 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A1 [Mapview hg19]  CT47A1 [Mapview hg38]
OMIM300780   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080146
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_027742 NG_027743 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)CT47A1
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000236371
Gene ExpressionCT47A1 [ NCBI-GEO ]   CT47A1 [ EBI - ARRAY_EXPRESS ]   CT47A1 [ SEEK ]   CT47A1 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728096
GTEX Portal (Tissue expression)CT47A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A1
DMDM Disease mutations728096
Blocks (Seattle)CT47A1
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000236371
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000236371
BioGRIDCT47A1
STRING (EMBL)CT47A1
ZODIACCT47A1
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A1
Atlas of Cancer Signalling NetworkCT47A1
Wikipedia pathwaysCT47A1
Orthology - Evolution
OrthoDB728096
GeneTree (enSembl)ENSG00000236371
Phylogenetic Trees/Animal Genes : TreeFamCT47A1
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A1
Homology/Alignments : Family Browser (UCSC)CT47A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A1
dbVarCT47A1
ClinVarCT47A1
1000_GenomesCT47A1 
Exome Variant ServerCT47A1
ExAC (Exome Aggregation Consortium)CT47A1 (select the gene name)
Genetic variants : HAPMAP728096
Genomic Variants (DGV)CT47A1 [DGVbeta]
DECIPHER (Syndromes)X:120011345-120066151  ENSG00000236371
CONAN: Copy Number AnalysisCT47A1 
Mutations
ICGC Data PortalCT47A1 
TCGA Data PortalCT47A1 
Broad Tumor PortalCT47A1
OASIS PortalCT47A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A1
DgiDB (Drug Gene Interaction Database)CT47A1
DoCM (Curated mutations)CT47A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A1 (select a term)
intoGenCT47A1
Cancer3DCT47A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300780   
Orphanet
MedgenCT47A1
Genetic Testing Registry CT47A1
NextProtQ5JQC4 [Medical]
TSGene728096
GENETestsCT47A1
Huge Navigator CT47A1 [HugePedia]
snp3D : Map Gene to Disease728096
BioCentury BCIQCT47A1
ClinGenCT47A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728096
Chemical/Pharm GKB GenePA164718206
Clinical trialCT47A1
Miscellaneous
canSAR (ICR)CT47A1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A1
EVEXCT47A1
GoPubMedCT47A1
iHOPCT47A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:02:02 CET 2017

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