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CT47A10 (cancer/testis antigen family 47, member A10)

Identity

Alias_namesmember 10
Alias_symbol (synonym)CT47.10
Other aliasCT47
HGNC (Hugo) CT47A10
LocusID (NCBI) 728036
Atlas_Id 50821
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120877491 and ends at 120932297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A10   33291
Cards
Entrez_Gene (NCBI)CT47A10  728036  cancer/testis antigen family 47, member A10
AliasesCT47; CT47.10
GeneCards (Weizmann)CT47A10
Ensembl hg19 (Hinxton)ENSG00000224089 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224089 [Gene_View]  ENSG00000224089 [Sequence]  chrX:120877491-120932297 [Contig_View]  CT47A10 [Vega]
ICGC DataPortalENSG00000224089
TCGA cBioPortalCT47A10
AceView (NCBI)CT47A10
Genatlas (Paris)CT47A10
WikiGenes728036
SOURCE (Princeton)CT47A10
Genetics Home Reference (NIH)CT47A10
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A10  -     chrX:120877491-120932297 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A10  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A10 - Xq24 [CytoView hg19]  CT47A10 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A10 [Mapview hg19]  CT47A10 [Mapview hg38]
OMIM300789   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A10
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000224089
Gene ExpressionCT47A10 [ NCBI-GEO ]   CT47A10 [ EBI - ARRAY_EXPRESS ]   CT47A10 [ SEEK ]   CT47A10 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728036
GTEX Portal (Tissue expression)CT47A10
Human Protein AtlasENSG00000224089-CT47A10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A10
DMDM Disease mutations728036
Blocks (Seattle)CT47A10
SuperfamilyQ5JQC4
Human Protein Atlas [tissue]ENSG00000224089-CT47A10 [tissue]
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000224089
BioGRIDCT47A10
STRING (EMBL)CT47A10
ZODIACCT47A10
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A10
Atlas of Cancer Signalling NetworkCT47A10
Wikipedia pathwaysCT47A10
Orthology - Evolution
OrthoDB728036
GeneTree (enSembl)ENSG00000224089
Phylogenetic Trees/Animal Genes : TreeFamCT47A10
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A10
Homology/Alignments : Family Browser (UCSC)CT47A10
Gene fusions - Rearrangements
Fusion : QuiverCT47A10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A10
dbVarCT47A10
ClinVarCT47A10
1000_GenomesCT47A10 
Exome Variant ServerCT47A10
ExAC (Exome Aggregation Consortium)ENSG00000224089
GNOMAD BrowserENSG00000224089
Varsome BrowserCT47A10
Genetic variants : HAPMAP728036
Genomic Variants (DGV)CT47A10 [DGVbeta]
DECIPHERCT47A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A10 
Mutations
ICGC Data PortalCT47A10 
TCGA Data PortalCT47A10 
Broad Tumor PortalCT47A10
OASIS PortalCT47A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCT47A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCT47A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A10
DgiDB (Drug Gene Interaction Database)CT47A10
DoCM (Curated mutations)CT47A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A10 (select a term)
intoGenCT47A10
Cancer3DCT47A10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300789   
Orphanet
DisGeNETCT47A10
MedgenCT47A10
Genetic Testing Registry CT47A10
NextProtQ5JQC4 [Medical]
TSGene728036
GENETestsCT47A10
Target ValidationCT47A10
Huge Navigator CT47A10 [HugePedia]
snp3D : Map Gene to Disease728036
BioCentury BCIQCT47A10
ClinGenCT47A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728036
Chemical/Pharm GKB GenePA164718217
Clinical trialCT47A10
Miscellaneous
canSAR (ICR)CT47A10 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A10
EVEXCT47A10
GoPubMedCT47A10
iHOPCT47A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:00:38 CET 2018

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