Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CT47A11 (cancer/testis antigen family 47, member A11)

Identity

Alias_namesmember 11
Alias_symbol (synonym)CT47.11
Other alias
HGNC (Hugo) CT47A11
LocusID (NCBI) 255313
Atlas_Id 50809
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120877491 and ends at 120932297 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A11   27397
Cards
Entrez_Gene (NCBI)CT47A11  255313  cancer/testis antigen family 47, member A11
AliasesCT47.11
GeneCards (Weizmann)CT47A11
Ensembl hg19 (Hinxton)ENSG00000226929 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226929 [Gene_View]  ENSG00000226929 [Sequence]  chrX:120877491-120932297 [Contig_View]  CT47A11 [Vega]
ICGC DataPortalENSG00000226929
TCGA cBioPortalCT47A11
AceView (NCBI)CT47A11
Genatlas (Paris)CT47A11
WikiGenes255313
SOURCE (Princeton)CT47A11
Genetics Home Reference (NIH)CT47A11
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A11  -     chrX:120877491-120932297 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A11  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A11 - Xq24 [CytoView hg19]  CT47A11 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A11 [Mapview hg19]  CT47A11 [Mapview hg38]
OMIM300592   
Gene and transcription
Genbank (Entrez)AI024600 BC029540 DB471077
RefSeq transcript (Entrez)NM_173571
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A11
Cluster EST : UnigeneHs.715076 [ NCBI ]
CGAP (NCI)Hs.715076
Alternative Splicing GalleryENSG00000226929
Gene ExpressionCT47A11 [ NCBI-GEO ]   CT47A11 [ EBI - ARRAY_EXPRESS ]   CT47A11 [ SEEK ]   CT47A11 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255313
GTEX Portal (Tissue expression)CT47A11
Human Protein AtlasENSG00000226929-CT47A11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A11
DMDM Disease mutations255313
Blocks (Seattle)CT47A11
SuperfamilyQ5JQC4
Human Protein Atlas [tissue]ENSG00000226929-CT47A11 [tissue]
Peptide AtlasQ5JQC4
HPRD06619
IPIIPI00167090   
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000226929
BioGRIDCT47A11
STRING (EMBL)CT47A11
ZODIACCT47A11
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A11
Atlas of Cancer Signalling NetworkCT47A11
Wikipedia pathwaysCT47A11
Orthology - Evolution
OrthoDB255313
GeneTree (enSembl)ENSG00000226929
Phylogenetic Trees/Animal Genes : TreeFamCT47A11
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A11
Homology/Alignments : Family Browser (UCSC)CT47A11
Gene fusions - Rearrangements
Fusion : QuiverCT47A11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A11
dbVarCT47A11
ClinVarCT47A11
1000_GenomesCT47A11 
Exome Variant ServerCT47A11
ExAC (Exome Aggregation Consortium)ENSG00000226929
GNOMAD BrowserENSG00000226929
Varsome BrowserCT47A11
Genetic variants : HAPMAP255313
Genomic Variants (DGV)CT47A11 [DGVbeta]
DECIPHERCT47A11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A11 
Mutations
ICGC Data PortalCT47A11 
TCGA Data PortalCT47A11 
Broad Tumor PortalCT47A11
OASIS PortalCT47A11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT47A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A11
DgiDB (Drug Gene Interaction Database)CT47A11
DoCM (Curated mutations)CT47A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A11 (select a term)
intoGenCT47A11
Cancer3DCT47A11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300592   
Orphanet
DisGeNETCT47A11
MedgenCT47A11
Genetic Testing Registry CT47A11
NextProtQ5JQC4 [Medical]
TSGene255313
GENETestsCT47A11
Target ValidationCT47A11
Huge Navigator CT47A11 [HugePedia]
snp3D : Map Gene to Disease255313
BioCentury BCIQCT47A11
ClinGenCT47A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255313
Chemical/Pharm GKB GenePA164718228
Clinical trialCT47A11
Miscellaneous
canSAR (ICR)CT47A11 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A11
EVEXCT47A11
GoPubMedCT47A11
iHOPCT47A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:17:34 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.