Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CT47A2 (cancer/testis antigen family 47, member A2)

Identity

Other namesCT47.2
HGNC (Hugo) CT47A2
LocusID (NCBI) 728090
Location Xq24
Location_base_pair Starts at 120011345 and ends at 120066151 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CT47A2   33283
Entrez_Gene (NCBI)CT47A2  728090  cancer/testis antigen family 47, member A2
Cards
GeneCards (Weizmann)CT47A2
Ensembl (Hinxton)ENSG00000242362 [Gene_View]  chrX:120011345-120066151 [Contig_View]  CT47A2 [Vega]
AceView (NCBI)CT47A2
Genatlas (Paris)CT47A2
SOURCE (Stanford)NM_001080145
Genomic and cartography
GoldenPath (UCSC)CT47A2  -  Xq24   chrX:120011345-120066151 -  Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A2 - Xq24 [CytoView]
Mapping of homologs : NCBICT47A2 [Mapview]
OMIM300781   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (SRS)NM_001080145
RefSeq transcript (Entrez)NM_001080145
RefSeq genomic (SRS)NC_000023 NG_027741 NG_027742 NT_011786
RefSeq genomic (Entrez)NC_000023 NG_027741 NG_027742 NT_011786
Consensus coding sequences : CCDS (NCBI)CT47A2
Cluster EST : UnigeneHs.729566 [ SRS ] Hs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing : Fast-db (Paris)GSHG0045635
Alternative Splicing GalleryENSG00000242362
Gene ExpressionCT47A2 [ NCBI-GEO ]   CT47A2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4 (SRS) Q5JQC4 (Uniprot)
NextProtQ5JQC4
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4(Swissvar)
Related proteins : CluSTrQ5JQC4
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM728090
Blocks (Seattle)Q5JQC4
Human Protein AtlasENSG00000242362
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000242362
REACTOMECT47A2
Protein Interaction Database728090
BioGRIDCT47A2
InParanoidQ5JQC4
Interologous Interaction database Q5JQC4
IntegromeDBCT47A2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CT47A2
SNP (GeneSNP Utah)CT47A2
SNP : HGBaseCT47A2
Genetic variants : HAPMAPCT47A2
Mutations and Diseases : HGMDCT47A2
OMIM300781   
GENETests300781   
Disease Genetic AssociationCT47A2
Huge Navigator CT47A2 [HugePedia]  CT47A2 [HugeCancerGEM]
Genomic VariantsCT47A2  CT47A2 [DGVbeta]
snp3D : Map Gene to Disease728090
General knowledge
Homologs : HomoloGeneCT47A2
Homology/Alignments : Family Browser (UCSC)CT47A2
Phylogenetic Trees/Animal Genes : TreeFamCT47A2
Chemical/Protein Interactions : CTD728090
Chemical/Pharm GKB GenePA164718239
Clinical trialCT47A2
Cancer Resource (Charite)ENSG00000242362
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
PubGeneCT47A2
iHOPCT47A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:35:19 CEST 2013
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