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CT47A2 (cancer/testis antigen family 47, member A2)

Identity

Alias_namesmember 2
Alias_symbol (synonym)CT47.2
Other alias
HGNC (Hugo) CT47A2
LocusID (NCBI) 728090
Atlas_Id 50798
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 120877491 and ends at 120932297 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CT47A2   33283
Cards
Entrez_Gene (NCBI)CT47A2  728090  cancer/testis antigen family 47, member A2
AliasesCT47.2
GeneCards (Weizmann)CT47A2
Ensembl hg19 (Hinxton)ENSG00000242362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242362 [Gene_View]  chrX:120877491-120932297 [Contig_View]  CT47A2 [Vega]
ICGC DataPortalENSG00000242362
TCGA cBioPortalCT47A2
AceView (NCBI)CT47A2
Genatlas (Paris)CT47A2
WikiGenes728090
SOURCE (Princeton)CT47A2
Genetics Home Reference (NIH)CT47A2
Genomic and cartography
GoldenPath hg38 (UCSC)CT47A2  -     chrX:120877491-120932297 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CT47A2  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblCT47A2 - Xq24 [CytoView hg19]  CT47A2 - Xq24 [CytoView hg38]
Mapping of homologs : NCBICT47A2 [Mapview hg19]  CT47A2 [Mapview hg38]
OMIM300781   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080145
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CT47A2
Cluster EST : UnigeneHs.729566 [ NCBI ]
CGAP (NCI)Hs.729566
Alternative Splicing GalleryENSG00000242362
Gene ExpressionCT47A2 [ NCBI-GEO ]   CT47A2 [ EBI - ARRAY_EXPRESS ]   CT47A2 [ SEEK ]   CT47A2 [ MEM ]
Gene Expression Viewer (FireBrowse)CT47A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728090
GTEX Portal (Tissue expression)CT47A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQC4
Splice isoforms : SwissVarQ5JQC4
PhosPhoSitePlusQ5JQC4
Domains : Interpro (EBI)CT47   
Domain families : Pfam (Sanger)CT47 (PF15623)   
Domain families : Pfam (NCBI)pfam15623   
Conserved Domain (NCBI)CT47A2
DMDM Disease mutations728090
Blocks (Seattle)CT47A2
SuperfamilyQ5JQC4
Human Protein AtlasENSG00000242362
Peptide AtlasQ5JQC4
Protein Interaction databases
DIP (DOE-UCLA)Q5JQC4
IntAct (EBI)Q5JQC4
FunCoupENSG00000242362
BioGRIDCT47A2
STRING (EMBL)CT47A2
ZODIACCT47A2
Ontologies - Pathways
QuickGOQ5JQC4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCT47A2
Atlas of Cancer Signalling NetworkCT47A2
Wikipedia pathwaysCT47A2
Orthology - Evolution
OrthoDB728090
GeneTree (enSembl)ENSG00000242362
Phylogenetic Trees/Animal Genes : TreeFamCT47A2
HOVERGENQ5JQC4
HOGENOMQ5JQC4
Homologs : HomoloGeneCT47A2
Homology/Alignments : Family Browser (UCSC)CT47A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCT47A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CT47A2
dbVarCT47A2
ClinVarCT47A2
1000_GenomesCT47A2 
Exome Variant ServerCT47A2
ExAC (Exome Aggregation Consortium)CT47A2 (select the gene name)
Genetic variants : HAPMAP728090
Genomic Variants (DGV)CT47A2 [DGVbeta]
DECIPHERCT47A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCT47A2 
Mutations
ICGC Data PortalCT47A2 
TCGA Data PortalCT47A2 
Broad Tumor PortalCT47A2
OASIS PortalCT47A2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCT47A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CT47A2
DgiDB (Drug Gene Interaction Database)CT47A2
DoCM (Curated mutations)CT47A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CT47A2 (select a term)
intoGenCT47A2
Cancer3DCT47A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300781   
Orphanet
MedgenCT47A2
Genetic Testing Registry CT47A2
NextProtQ5JQC4 [Medical]
TSGene728090
GENETestsCT47A2
Target ValidationCT47A2
Huge Navigator CT47A2 [HugePedia]
snp3D : Map Gene to Disease728090
BioCentury BCIQCT47A2
ClinGenCT47A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728090
Chemical/Pharm GKB GenePA164718239
Clinical trialCT47A2
Miscellaneous
canSAR (ICR)CT47A2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCT47A2
EVEXCT47A2
GoPubMedCT47A2
iHOPCT47A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:04:06 CEST 2017

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